Name: Rickettsia conorii subsp. raoultii Khabarovsk
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134245

Type strain:

Species: Rickettsia conorii subsp. raoultii

Strain Designation: Khabarovsk

Culture col. no.: CSUR R3, ATCC VR-1596

NCBI tax ID(s): 369822 (subspecies)

Section

Rickettsia conorii subsp. raoultii Khabarovsk is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from ticks.

Gram-negative
rod-shaped
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rickettsiales*
	Family	*Rickettsiaceae*
	Genus	*Rickettsia*
	Species	**Rickettsia conorii subsp. raoultii**
	Full Scientific Name (LPSN)	Rickettsia conorii subsp. raoultii (Mediannikov et al. 2008) Hördt et al. 2020

Synonym

Rickettsia raoultii

Information on morphological and physiological properties Morphology

[Ref.: #32092]	Gram stain	negative

[Ref.: #32092]	Cell length	0.6-2 µm

[Ref.: #32092]	Cell width	0.4 µm

[Ref.: #32092]	Cell shape	rod-shaped

[Ref.: #32092]	Motility	no

[Ref.: #32092]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #32092]			growth	32 °C
[Ref.: #32092]			optimum	32 °C

[Ref.: #32092]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32092]

Ability of spore formation

[Ref.: #32092]

Observation

aggregates in chains

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #32092]	Sample type/isolated from	ticks
* marker position based on {}

Isolation sources categories

#Host

#Arthropoda

#Tick

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ365810 (>99% sequence identity) for Rickettsia from Microbeatlas

Aquatic Samples	1126
Soil Samples	494
Animal Samples	2180
Plant Samples	561
Total Samples	4361

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32092]	Rickettsia raoultii strain Khabarovsk 16S ribosomal RNA gene, partial sequence	DQ365810	1421	GenBank	369822 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rickettsia conorii subsp. raoultii Khabarovsk	GCA_000940955	chromosome	GenBank	369822 tax ID	*

[Ref.: #32092]

GC-content

33.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rickettsia conorii subsp. raoultii Khabarovsk NCBI: GCA_000940955.1
[Ref.: #69480]	motile	no	92.595	yes
[Ref.: #69480]	flagellated	no	98.073	yes
[Ref.: #69480]	gram-positive	no	97.916	yes
[Ref.: #69480]	anaerobic	no	96.451	no
[Ref.: #69480]	aerobic	no	87.188	no
[Ref.: #69480]	halophile	no	76.534	no
[Ref.: #69480]	spore-forming	no	96.973	yes
[Ref.: #69480]	glucose-util	no	60.654	no
[Ref.: #69480]	thermophile	no	96.447	yes
[Ref.: #69480]	glucose-ferment	no	77.375	no

Availability in culture collections External links

[Ref.: #32092]

Culture collection no.

CSUR R3, ATCC VR-1596

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32092

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28338 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#28338

IJSEM 1635 2008 ( DOI 10.1099/ijs.0.64952-0 , PubMed 18599708 )

* These data were automatically processed and therefore are not curated

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