Psychromonas hadalis (JCM 11830, ATCC BAA-638, K41G)

Name: Psychromonas hadalis (JCM 11830, ATCC BAA-638, K41G)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134244

Type strain

Strain Designation K41G

Culture col. no. JCM 11830 ATCC BAA-638 K41G

NCBI tax ID(s) 1278302 211669

Special Collections JCM Literature strains

Links

Psychromonas hadalis K41G is a facultative anaerobe, psychrophilic, Gram-negative prokaryote that was isolated from bottom of Japan Trench.

Gram-negative motile rod-shaped facultative anaerobe psychrophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 309498

ATCC BAA-638,JCM 11830

@ref 20215

Last LPSN update 2025-12-16 10:02:00

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Psychromonadaceae

Genus Psychromonas

Species Psychromonas hadalis

Full scientific name Psychromonas hadalis Nogi et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
32081	negative	1.5-2 µm	0.8-1 µm	rod-shaped
125438	negative

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
32081	positive	growth	02-12	psychrophilic
32081	positive	optimum	6	psychrophilic
67770	positive	growth	10	psychrophilic

Physiology and metabolism

Oxygen tolerance

32081

Oxygen tolerancefacultative anaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32081	NaCl	positive	optimum	3 %

Observation

67770

Observationquinones: Q-8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32081	28260 ChEBI	galactose	+	carbon source
32081	17754 ChEBI	glycerol	+	carbon source
32081	37684 ChEBI	mannose	+	carbon source
32081	17632 ChEBI	nitrate	+	reduction
32081	27082 ChEBI	trehalose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32081	catalase	+	1.11.1.6
32081	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type
32081	bottom of Japan Trench
67770	Sediment collected from the bottom of the Japan Trench at a depth of 7,542 m

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM42024v1 assembly for Psychromonas hadalis ATCC BAA-638	contig	GCA_000420245	1278302.3	2524614867	1278302	7.84

Genome browser: GCA_000420245

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
32081	Psychromonas hadalis gene for 16S rRNA, partial sequence, strain:K41G	AB094413	1451		211669

GC content

67770

GC-content (mol%)39.1

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Psychromonas hadalis ATCC BAA-638 ATCC BAA-638
NCBI: GCA_000420245.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	yes
125438	anaerobic	anaerobicⓘ	no	90.53	yes
125438	aerobic	aerobicⓘ	no	65.82	yes
125438	spore-forming	spore-formingⓘ	no	89.72	no
125438	thermophilic	thermophileⓘ	no	93.46	no
125438	flagellated	motile2+ⓘ	yes	82.34	no

Literature

Title	Authors	Journal	DOI	Year
Genome Reduction in Psychromonas Species within the Gut of an Amphipod from the Ocean's Deepest Point.	Zhang W, Tian RM, Sun J, Bougouffa S, Ding W, Cai L, Lan Y, Tong H, Li Y, Jamieson AJ, Bajic VB, Drazen JC, Bartlett D, Qian PY.	mSystems	10.1128/msystems.00009-18	2018
Psychromonas hadalis sp. nov., a novel piezophilic bacterium isolated from the bottom of the Japan Trench.	Nogi Y, Hosoya S, Kato C, Horikoshi K	Int J Syst Evol Microbiol	10.1099/ijs.0.64933-0	2007

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#32081	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28327 (see below)
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Psychromonas hadalis (JCM 11830, ATCC BAA-638, K41G)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000420245

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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