Name: Saccharomonospora glauca K62
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13424

Type strain:

Species: Saccharomonospora glauca

Strain Designation: K62

Culture col. no.: DSM 43769, IFO 14831, JCM 7444, NBRC 14831, BCRC 16222, CGMCC 4.1329, KACC 20053, KCTC 9479

Strain history: H. J. Kutzner K62.

NCBI tax ID(s): 928724 (strain), 40990 (species)

SI-ID 264372

DSM 43769, JCM 7444, IFO 14831, KCTC 9479, NBRC 14831, BCRC 16222, CCRC 16222, KACC 20053, CGMCC 4.1329

Other strains from Saccharomonospora glauca

S. glauca K63, DSM 43770
S. glauca K68, DSM 43771
S. glauca DSM 44012, CBS 498.63, IFO 12530, ...
S. glauca JCM 10978, IFO 14050, KCTC 3673, ...

Section

Saccharomonospora glauca K62 is a mesophilic bacterium that builds an aerial mycelium and was isolated from composted garbage.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Saccharomonospora*
	Species	**Saccharomonospora glauca**
	Full Scientific Name (LPSN)	Saccharomonospora glauca Greiner-Mai et al. 1988

Information on morphological and physiological properties Morphology

[Ref.: #19954]	Colony color	Ochre brown (8001)
[Ref.: #19954]	Incubation period	10-14 days
[Ref.: #19954]	Cultivation medium used	ISP 2

[Ref.: #19954]	Colony color	Ochre brown (8001)
[Ref.: #19954]	Incubation period	10-14 days
[Ref.: #19954]	Cultivation medium used	ISP 3

[Ref.: #19954]	Colony color	Ochre brown (8001)
[Ref.: #19954]	Incubation period	10-14 days
[Ref.: #19954]	Cultivation medium used	ISP 4

[Ref.: #19954]	Colony color	Ochre brown (8001)
[Ref.: #19954]	Incubation period	10-14 days
[Ref.: #19954]	Cultivation medium used	ISP 5

[Ref.: #19954]	Colony color	Ochre brown (8001)
[Ref.: #19954]	Incubation period	10-14 days
[Ref.: #19954]	Cultivation medium used	ISP 6

[Ref.: #19954]	Colony color	Ochre brown (8001)
[Ref.: #19954]	Incubation period	10-14 days
[Ref.: #19954]	Cultivation medium used	ISP 7

[Ref.: #19954]	Multicellular complex forming ability	no
[Ref.: #19954]	Medium Name (multicellularity)	ISP 2

[Ref.: #19954]	Multicellular complex forming ability	yes
[Ref.: #19954]	Multicellular complex name	Aerial Mycelium
[Ref.: #19954]	Multicellular complex color	White
[Ref.: #19954]	Medium Name (multicellularity)	ISP 3

[Ref.: #19954]	Multicellular complex forming ability	no
[Ref.: #19954]	Medium Name (multicellularity)	ISP 4

[Ref.: #19954]	Multicellular complex forming ability	no
[Ref.: #19954]	Medium Name (multicellularity)	ISP 5

[Ref.: #19954]	Multicellular complex forming ability	yes
[Ref.: #19954]	Multicellular complex name	Aerial Mycelium
[Ref.: #19954]	Multicellular complex color	White
[Ref.: #19954]	Medium Name (multicellularity)	ISP 6

[Ref.: #19954]	Multicellular complex forming ability	no
[Ref.: #19954]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11057]

Culture medium

GLYCEROL CORNSTEEP AGAR (DSMZ Medium 581)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

ORGANIC MEDIUM 79 (DSMZ Medium 426)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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[Ref.: #19954]

Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 6

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 7

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Culture medium growth

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #11057]	growth	37 °C
[Ref.: #19954]	optimum	37 °C
[Ref.: #67770]	growth	40 °C

[Ref.: #11057]	Temperature range	mesophilic
[Ref.: #19954]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19954]		NaCl		maximum	7.5	%

[Ref.: #67770]

Observation

quinones: MK-9(H₄), MK-8(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19954]	arabinose ChEBI	+/-
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19954]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #19954]	fructose ChEBI	-
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #19954]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #19954]	mannitol ChEBI	-
[Ref.: #19954]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #19954]	raffinose ChEBI	-
[Ref.: #19954]	rhamnose ChEBI	-
[Ref.: #19954]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19954]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19954]	560	-	+	+	+	+	-	+	-	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19954]	756	not determinedn.d.	+	+	+	+	-	-	+	-	-	+	+	-	+	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11057]	Sample type/isolated from	composted garbage
* marker position based on {}

Isolation sources categories

#Engineered

#Biodegradation

#Composting

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Z38003 (>99% sequence identity) for Saccharomonospora glauca subclade from Microbeatlas

Aquatic Samples	397
Soil Samples	1279
Animal Samples	969
Plant Samples	465
Total Samples	3110

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11057]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19954]	Biosafety level	1	German classification

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Saccharomonospora glauca strain K169 16S-23S ribosomal RNA gene, internal transcribed spacer	U73404	182	ENA	928724 tax ID	*
[Ref.: #20218]	S.glauca gene for 16S ribosomal RNA	Z38003	1490	ENA	928724 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Saccharomonospora glauca K62	GCA_000243395	chromosome	GenBank	928724 tax ID	*
[Ref.: #66792]	Saccharomonospora glauca K62	928724.3	wgs	PATRIC	928724 tax ID	*
[Ref.: #66792]	Saccharomonospora glauca K62	928724.5	plasmid	PATRIC	928724 tax ID	*
[Ref.: #66792]	Saccharomonospora glauca K62, DSM 43769	2508501119	draft	JGI IMG/M	928724 tax ID	*

[Ref.: #67770]

GC-content

69.1 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Saccharomonospora glauca K62 K62 NCBI: GCA_000243395.3
[Ref.: #69480]	motile	no	91.844	no
[Ref.: #69480]	flagellated	no	96.258	no
[Ref.: #69480]	gram-positive	yes	89.424	no
[Ref.: #69480]	anaerobic	no	98.327	no
[Ref.: #69480]	aerobic	yes	86.959	no
[Ref.: #69480]	halophile	yes	61.833	no
[Ref.: #69480]	spore-forming	yes	67.964	no
[Ref.: #69480]	thermophile	no	68.259	no
[Ref.: #69480]	glucose-util	yes	87.701	yes
[Ref.: #69480]	glucose-ferment	no	92.492	no

Availability in culture collections External links

[Ref.: #11057]

Culture collection no.

DSM 43769, IFO 14831, JCM 7444, NBRC 14831, BCRC 16222, CGMCC 4.1329, KACC 20053, KCTC 9479

[Ref.: #82617]

SI-ID 264372

References

#11057

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43769

#19954

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#82617

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID264372.1 )

* These data were automatically processed and therefore are not curated

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Saccharomonospora glauca K62 K62

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