Name: Hoylesella pleuritidis JCM 14110
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 134238

Type strain:

Species: Hoylesella pleuritidis

Culture col. no.: JCM 14110, CCUG 54350, GTC 3021

Strain history: T. Ezaki GTC 3021.

NCBI tax ID(s): 407975 (species)

SI-ID 294006

JCM 14110, CCUG 54350, DSM 18744

Special Collections

Section

Hoylesella pleuritidis JCM 14110 is an anaerobe, Gram-negative, rod-shaped bacterium that was isolated from human pleural fluid.

Gram-negative
rod-shaped
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Prevotellaceae*
	Genus	*Hoylesella*
	Species	**Hoylesella pleuritidis**
	Full Scientific Name (LPSN)	Hoylesella pleuritidis (Sakamoto et al. 2007) Hitch et al. 2023

Synonym

Prevotella pleuritidis

Information on morphological and physiological properties Morphology

[Ref.: #32054]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %95.757

[Ref.: #32054]	Cell length	3 µm

[Ref.: #32054]	Cell width	0.8 µm

[Ref.: #32054]	Cell shape	rod-shaped

[Ref.: #32054]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %90.667

[Ref.: #60143]

Incubation period

2 days

[Ref.: #32054]

Pigment production

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #60143]			growth	37 °C
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32054]	Oxygen tolerance	anaerobe
[Ref.: #60143]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %91.48

[Ref.: #32054]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %91.555
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-11, MK-12

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32054]	glucose ChEBI	+	carbon source
[Ref.: #32054]	lactose ChEBI	+	carbon source
[Ref.: #32054]	maltose ChEBI	+	carbon source
[Ref.: #32054]	mannose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity
[Ref.: #32054]		gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #32054]	Sample type/isolated from	human pleural fluid

[Ref.: #60143]	Sample type/isolated from	Human pleural fluid,suppurative pleuritis
[Ref.: #60143]	Geographic location (country and/or sea, region)	Gifu ?
[Ref.: #60143]	Country	Japan
[Ref.: #60143]	Country ISO 3 Code	JPN
[Ref.: #60143]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Pleural fluid of a patient with suppurative pleuritis
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Oral cavity and Airways	#Pleural fluid
#Infection	#Patient	-
#Host Body-Site	#Oral cavity and airways	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB278593 (>99% sequence identity) for Prevotella pleuritidis subclade from Microbeatlas

Aquatic Samples	188
Soil Samples	116
Animal Samples	16012
Plant Samples	86
Total Samples	16402

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32054]	Prevotella pleuritidis gene for 16S ribosomal RNA, partial sequence	AB278593	1467	GenBank ENA	407975 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Hoylesella pleuritidis JCM 14110	GCA_000613725	contig	GenBank ENA	1236494 tax ID
[Ref.: #66792]	Prevotella pleuritidis JCM 14110	1236494.3	wgs	PATRIC	1236494 tax ID	*
[Ref.: #66792]	Prevotella pleuritidis JCM 14110	2565956597	draft	JGI IMG/M	1236494 tax ID	*

[Ref.: #32054]	GC-content	45.4 mol%
[Ref.: #67770]	GC-content	45.4 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Prevotella pleuritidis JCM 14110 PATRIC: 1236494.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Prevotella pleuritidis JCM 14110 PATRIC: 1236494.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	95.757	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	91.48	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	91.555	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	96.825	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.346	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90.667	yes

Availability in culture collections External links

[Ref.: #32054]

Culture collection no.

JCM 14110, CCUG 54350, GTC 3021

[Ref.: #91831]

SI-ID 294006

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Prevotella pleuritidis sp. nov., isolated from pleural fluid.	Sakamoto M, Ohkusu K, Masaki T, Kako H, Ezaki T, Benno Y	Int J Syst Evol Microbiol	10.1099/ijs.0.64885-0	2007	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32054

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28303 (see below)

#60143 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54350

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91831

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID294006.1 )

#28303

IJSEM 1725 2007 ( DOI 10.1099/ijs.0.64885-0 , PubMed 17684245 )

* These data were automatically processed and therefore are not curated

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Prevotella pleuritidis JCM 14110

Prevotella pleuritidis JCM 14110

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