Altererythrobacter epoxidivorans (KCCM 42314, JCM 13815, JCS350T)

Name: Altererythrobacter epoxidivorans (KCCM 42314, JCM 13815, JCS350T)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134236

Type strain

Strain Designation JCS350T

Culture col. no. KCCM 42314 JCM 13815 JCS350T CGMCC 1.7731

NCBI tax ID(s) 361183

Special Collections JCM Literature strains

Links

Altererythrobacter epoxidivorans JCS350T is an aerobe, Gram-negative, rod-shaped prokaryote that was isolated from marine sediment.

Gram-negative rod-shaped aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 310987

JCM 13815

@ref 20215

Last LPSN update 2025-12-16 10:02:00

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Erythrobacteraceae

Genus Altererythrobacter

Species Altererythrobacter epoxidivorans

Full scientific name Altererythrobacter epoxidivorans Kwon et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
32040	negative	0.605 µm	0.5 µm	rod-shaped
125438	negative
125439	negative

Pigmentation

32040

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
32040	positive	growth	20-40
32040	positive	optimum	35
67770	positive	growth	35

Culture pH

@ref	Ability	Type	PH
32040	positive	optimum	6.5
32040	positive	growth	6-8.5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
32040	aerobe
125439	obligate aerobe

Spore formation

@ref	Spore formation	Confidence
125438		91.215
125439		98.7

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32040	NaCl	positive	growth	0.5-9 %
32040	NaCl	positive	optimum	2 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32040	17128 ChEBI	adipate	+	carbon source
32040	29987 ChEBI	glutamate	+	carbon source
32040	17306 ChEBI	maltose	+	carbon source
32040	29864 ChEBI	mannitol	+	carbon source
32040	506227 ChEBI	N-acetylglucosamine	+	carbon source
32040	26271 ChEBI	proline	+	carbon source
32040	17822 ChEBI	serine	+	carbon source
32040	27082 ChEBI	trehalose	+	carbon source
32040	53423 ChEBI	tween 40	+	carbon source
32040	53426 ChEBI	tween 80	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32040	alkaline phosphatase	+	3.1.3.1
32040	catalase	+	1.11.1.6
32040	cytochrome oxidase	+	1.9.3.1

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	octane oxidation	100	3 of 3
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	adipate degradation	100	2 of 2
66794	valine metabolism	100	9 of 9
66794	ethylmalonyl-CoA pathway	100	5 of 5
66794	methylglyoxal degradation	100	5 of 5
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	cardiolipin biosynthesis	100	7 of 7
66794	palmitate biosynthesis	100	22 of 22
66794	gluconeogenesis	100	8 of 8
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	taurine degradation	100	1 of 1
66794	ppGpp biosynthesis	100	4 of 4
66794	Entner Doudoroff pathway	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	photosynthesis	85.71	12 of 14
66794	leucine metabolism	84.62	11 of 13
66794	phenylalanine metabolism	84.62	11 of 13
66794	NAD metabolism	83.33	15 of 18
66794	glycogen metabolism	80	4 of 5
66794	glycine betaine biosynthesis	80	4 of 5
66794	propionate fermentation	80	8 of 10
66794	threonine metabolism	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	lipoate biosynthesis	80	4 of 5
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	purine metabolism	78.72	74 of 94
66794	citric acid cycle	78.57	11 of 14
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	serine metabolism	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	acetate fermentation	75	3 of 4
66794	lactate fermentation	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	heme metabolism	71.43	10 of 14
66794	alanine metabolism	68.97	20 of 29
66794	acetoin degradation	66.67	2 of 3
66794	flavin biosynthesis	66.67	10 of 15
66794	d-mannose degradation	66.67	6 of 9
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	tryptophan metabolism	65.79	25 of 38
66794	non-pathway related	65.79	25 of 38
66794	methionine metabolism	65.38	17 of 26
66794	lipid metabolism	64.52	20 of 31
66794	pyrimidine metabolism	64.44	29 of 45
66794	tyrosine metabolism	64.29	9 of 14
66794	glutathione metabolism	64.29	9 of 14
66794	proline metabolism	63.64	7 of 11
66794	pentose phosphate pathway	63.64	7 of 11
66794	vitamin B6 metabolism	63.64	7 of 11
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	arginine metabolism	62.5	15 of 24
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	phosphatidylethanolamine bioynthesis	61.54	8 of 13
66794	cysteine metabolism	61.11	11 of 18
66794	polyamine pathway	60.87	14 of 23
66794	glycolysis	58.82	10 of 17
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	propanol degradation	57.14	4 of 7
66794	nitrate assimilation	55.56	5 of 9
66794	histidine metabolism	55.17	16 of 29
66794	metabolism of disaccharids	54.55	6 of 11
66794	d-xylose degradation	54.55	6 of 11
66794	sulfate reduction	53.85	7 of 13
66794	degradation of sugar acids	52	13 of 25
66794	biotin biosynthesis	50	2 of 4
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	phenol degradation	50	10 of 20
66794	toluene degradation	50	2 of 4
66794	ethanol fermentation	50	1 of 2
66794	cyclohexanol degradation	50	2 of 4
66794	glycogen biosynthesis	50	2 of 4
66794	resorcinol degradation	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	ketogluconate metabolism	50	4 of 8
66794	lysine metabolism	47.62	20 of 42
66794	bile acid biosynthesis, neutral pathway	47.06	8 of 17
66794	urea cycle	46.15	6 of 13
66794	dolichyl-diphosphooligosaccharide biosynthesis	45.45	5 of 11
66794	lipid A biosynthesis	44.44	4 of 9
66794	oxidative phosphorylation	40.66	37 of 91
66794	vitamin K metabolism	40	2 of 5
66794	3-phenylpropionate degradation	40	6 of 15
66794	factor 420 biosynthesis	40	2 of 5
66794	myo-inositol biosynthesis	40	4 of 10
66794	hydrogen production	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	3-chlorocatechol degradation	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	arachidonic acid metabolism	38.89	7 of 18
66794	carotenoid biosynthesis	36.36	8 of 22
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	glycolate and glyoxylate degradation	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	pantothenate biosynthesis	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	degradation of pentoses	32.14	9 of 28
66794	degradation of sugar alcohols	31.25	5 of 16
66794	androgen and estrogen metabolism	31.25	5 of 16
66794	coenzyme M biosynthesis	30	3 of 10
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	degradation of hexoses	27.78	5 of 18
66794	ascorbate metabolism	27.27	6 of 22
66794	catecholamine biosynthesis	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	4-hydroxymandelate degradation	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type
32040	marine sediment
67770	Cold-seep sediments of Kagoshima Bay

Taxonmaps

69479

Global distribution of 16S sequence DQ304436 (>99% sequence identity) for Altererythrobacter epoxidivorans subclade from Microbeatlas

Aquatic Samples	396
Soil Samples	197
Animal Samples	183
Plant Samples	5
Total Samples	781

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM128148v1 assembly for Altererythrobacter epoxidivorans CGMCC 1.7731	complete	GCA_001281485	361183.4	2648501698	361183	95.57

Genome browser: GCA_001281485

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
32040	Altererythrobacter epoxidivorans strain JCS350 16S ribosomal RNA gene, partial sequence	DQ304436	1444		361183

GC content

@ref	GC-content (mol%)
32040	54.5
67770	54.5
67770	61.5

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Altererythrobacter epoxidivorans strain CGMCC 1.7731
PATRIC: 361183.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.70	no
125439	motility	BacteriaNetⓘ	yes	56.00	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Altererythrobacter epoxidivorans CGMCC 1.7731
NCBI: GCA_001281485.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.83	yes
125438	anaerobic	anaerobicⓘ	no	93.25	yes
125438	aerobic	aerobicⓘ	yes	84.91	yes
125438	spore-forming	spore-formingⓘ	no	91.22	no
125438	thermophilic	thermophileⓘ	no	96.11	yes
125438	flagellated	motile2+ⓘ	no	65.21	no

Literature

Title	Authors	Journal	DOI	Year
Evolutionary Genomics of an Ancient Prophage of the Order Sphingomonadales.	Viswanathan V, Narjala A, Ravichandran A, Jayaprasad S, Siddaramappa S.	Genome Biol Evol	10.1093/gbe/evx024	2017
Characterization of a novel alkaline esterase from Altererythrobacter epoxidivorans CGMCC 1.7731(T).	Rong Z, Huo YY, Jian SL, Wu YH, Xu XW	Prep Biochem Biotechnol	10.1080/10826068.2017.1387559	2018
Complete genome sequence of a benzo[a]pyrene-degrading bacterium Altererythrobacter epoxidivorans CGMCC 1.7731(T).	Li ZY, Wu YH, Huo YY, Cheng H, Wang CS, Xu XW	Mar Genomics	10.1016/j.margen.2015.11.009	2015
Altererythrobacter arenosus sp. nov., Isolated from Marine Sediment.	Ahn S, Lee Y, Weerawongwiwat V, Kim JH, Lee JS, Yoon JH, Sukhoom A, Kim W.	Curr Microbiol	10.1007/s00284-024-03995-0	2024
Altererythrobacter litoralis sp. nov., a New Carotenoid-Producing Member of the Family Erythrobacteraceae, Isolated from a Tidal Flat Sediment.	Liu Y, Pei T, Du J, Zhang M, Zhu H.	Curr Microbiol	10.1007/s00284-024-03714-9	2024
Altererythrobacter marensis sp. nov., isolated from seawater.	Seo SH, Lee SD	Int J Syst Evol Microbiol	10.1099/ijs.0.011031-0	2009
Altererythrobacter epoxidivorans gen. nov., sp. nov., an epoxide hydrolase-active, mesophilic marine bacterium isolated from cold-seep sediment, and reclassification of Erythrobacter luteolus Yoon et al. 2005 as Altererythrobacter luteolus comb. nov.	Kwon KK, Woo JH, Yang SH, Kang JH, Kang SG, Kim SJ, Sato T, Kato C	Int J Syst Evol Microbiol	10.1099/ijs.0.64863-0	2007

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#32040	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28290 (see below)
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Altererythrobacter epoxidivorans (KCCM 42314, JCM 13815, JCS350T)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_001281485

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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