Name: Alteromonas simiduii BCRC 17572
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134230

Type strain:

Species: Alteromonas simiduii

Culture col. no.: BCRC 17572, JCM 13896, AS 1

Strain history: W. Y. Shieh AS1.

NCBI tax ID(s): 398036 (species)

SI-ID 307509

BCRC 17572, CCRC 17572

Section

Alteromonas simiduii BCRC 17572 is an aerobe, Gram-negative, motile bacterium that was isolated from estuarine water.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Alteromonadaceae*
	Genus	*Alteromonas*
	Species	**Alteromonas simiduii**
	Full Scientific Name (LPSN)	Alteromonas simiduii Chiu et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #31985]	Gram stain	negative

[Ref.: #31985]	Cell length	1.2-2.5 µm

[Ref.: #31985]	Cell width	0.4-0.8 µm

[Ref.: #31985]	Cell shape	rod-shaped

[Ref.: #31985]	Motility	yes

[Ref.: #31985]

Pigment production

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #31985]	growth	15-40 °C
[Ref.: #31985]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #31985]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31985]			optimum	7.5
[Ref.: #31985]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31985]

Oxygen tolerance

aerobe

[Ref.: #31985]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31985]		NaCl		growth	0.5-13	%
[Ref.: #31985]		NaCl		optimum	6.75	%

[Ref.: #67770]

Observation

quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31985]	3-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #31985]	acetate ChEBI	+	carbon source
[Ref.: #31985]	alanine ChEBI	+	carbon source
[Ref.: #31985]	cellobiose ChEBI	+	carbon source
[Ref.: #31985]	fructose ChEBI	+	carbon source
[Ref.: #31985]	galactose ChEBI	+	carbon source
[Ref.: #31985]	glucose ChEBI	+	carbon source
[Ref.: #31985]	glutamate ChEBI	+	carbon source
[Ref.: #31985]	glycerol ChEBI	+	carbon source
[Ref.: #31985]	lactate ChEBI	+	carbon source
[Ref.: #31985]	lactose ChEBI	+	carbon source
[Ref.: #31985]	melibiose ChEBI	+	carbon source
[Ref.: #31985]	nitrate ChEBI	+	reduction
[Ref.: #31985]	ribose ChEBI	+	carbon source
[Ref.: #31985]	sucrose ChEBI	+	carbon source
[Ref.: #31985]	threonine ChEBI	+	carbon source
[Ref.: #31985]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31985]		catalase	+	1.11.1.6
[Ref.: #31985]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31985]	Sample type/isolated from	estuarine water

[Ref.: #67770]	Sample type/isolated from	Water sample collected at the estuary of the Er-Jen River
[Ref.: #67770]	Geographic location (country and/or sea, region)	Tainan
[Ref.: #67770]	Country	Taiwan
[Ref.: #67770]	Country ISO 3 Code	TWN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Brackish
#Environmental	#Aquatic	#Estuary

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ836766 (>99% sequence identity) for Alteromonas from Microbeatlas

Aquatic Samples	5573
Soil Samples	47
Animal Samples	164
Plant Samples	28
Total Samples	5812

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31985]	Alteromonas simiduii strain BCRC 17572 16S ribosomal RNA gene, partial sequence	DQ836766	1395	GenBank	398036 tax ID

[Ref.: #31985]	GC-content	45.3 mol%
[Ref.: #67770]	GC-content	45.3 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #31985]

Culture collection no.

BCRC 17572, JCM 13896, AS 1

[Ref.: #91824]

SI-ID 307509

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Alteromonas halophila sp. nov., a new moderately halophilic bacterium isolated from a sea anemone.	Chen YG, Xiao HD, Tang SK, Zhang YQ, Borrathybay E, Cui XL, Li WJ, Liu YQ	Antonie Van Leeuwenhoek	10.1007/s10482-009-9341-8	2009	*
Phylogeny	Alteromonas tagae sp. nov. and Alteromonas simiduii sp. nov., mercury-resistant bacteria isolated from a Taiwanese estuary.	Chiu HH, Shieh WY, Lin SY, Tseng CM, Chiang PW, Wagner-Dobler I	Int J Syst Evol Microbiol	10.1099/ijs.0.64762-0	2007	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31985

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28239 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91824

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID307509.1 )

#28239

IJSEM 1209 2007 ( DOI 10.1099/ijs.0.64762-0 , PubMed 17551031 )

* These data were automatically processed and therefore are not curated

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