Name: Marixanthomonas ophiurae NRIC 0684
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134220

Type strain:

Species: Marixanthomonas ophiurae

Culture col. no.: NRIC 0684, JCM 14121, KMM 3046, CIP 109555

Strain history: CIP <- 2007, JCM <- 2006, M. Uchino, Tokyo Agricult. Univ., Tokyo, Japan <- L.A. Romanenko, Vladivostok, Russia

NCBI tax ID(s): 387659 (species)

SI-ID 297232

JCM 14121, CIP 109555

Section

Marixanthomonas ophiurae NRIC 0684 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Ophiuroid specimen collected from the Fiji Sea at a depth of 480 m.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Marixanthomonas*
	Species	**Marixanthomonas ophiurae**
	Full Scientific Name (LPSN)	Marixanthomonas ophiurae Romanenko et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #31925]	Gram stain	negative
[Ref.: #121426]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.987

[Ref.: #31925]	Cell length	2.5 µm

[Ref.: #31925]	Cell width	0.45 µm

[Ref.: #31925]	Cell shape	rod-shaped
[Ref.: #121426]	Cell shape	rod-shaped

[Ref.: #31925]	Motility	no
[Ref.: #121426]	Motility	no

[Ref.: #31925]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #37764]

Culture medium

Marine agar (MA)

[Ref.: #37764]

Culture medium growth

[Ref.: #37764]

Culture medium composition

expand / minimize

[Ref.: #121426]

Culture medium

CIP Medium 13

[Ref.: #121426]

Culture medium growth

[Ref.: #121426]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #31925]	growth	05-32 °C
[Ref.: #31925]	optimum	26.5 °C
[Ref.: #37764]	growth	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #31925]	Temperature range	mesophilic
[Ref.: #37764]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31925]			optimum	7.5
[Ref.: #31925]			growth	6.5-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31925]

Oxygen tolerance

aerobe

[Ref.: #31925]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31925]		NaCl		growth	1.0-12	%
[Ref.: #31925]		NaCl		optimum	4	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #121426]	nitrate ChEBI	-	reduction
[Ref.: #121426]	nitrite ChEBI	-	reduction
[Ref.: #31925]	tween 20 ChEBI	+	carbon source
[Ref.: #31925]	tween 40 ChEBI	+	carbon source
[Ref.: #31925]	tween 80 ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #121426]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #31925]	catalase	+	1.11.1.6
[Ref.: #121426]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #31925]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #31925]	gelatinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121426]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #121426]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121426]	11951	-	+	+	+	-	+	+	-	-	+	-	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Ophiuroid specimen collected from the Fiji Sea at a depth of 480 m

[Ref.: #121426]	Sample type/isolated from	Environment, Deep sea, brittle star
[Ref.: #121426]	Geographic location (country and/or sea, region)	Fiji Sea
[Ref.: #121426]	Country	Fiji
[Ref.: #121426]	Country ISO 3 Code	FJI
[Ref.: #121426]	Continent	Australia and Oceania
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB261012 (>99% sequence identity) for Marixanthomonas ophiurae subclade from Microbeatlas

Aquatic Samples	1240
Soil Samples	64
Animal Samples	217
Plant Samples	4
Total Samples	1525

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #121426]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31925]	Marixanthomonas ophiurae gene for 16S rRNA, partial sequence, strain: KMM 3046	AB261012	1397	GenBank	387659 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Marixanthomonas ophiurae KMM 3046	GCA_003413745	contig	GenBank	387659 tax ID
[Ref.: #66792]	Marixanthomonas ophiurae strain KMM 3046	387659.5	wgs	PATRIC	387659 tax ID	*
[Ref.: #66792]	Marixanthomonas ophiurae KMM 3046	2887695450	draft	JGI IMG/M	387659 tax ID	*

[Ref.: #31925]	GC-content	37.3 mol%
[Ref.: #67770]	GC-content	37.3 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Marixanthomonas ophiurae strain KMM 3046 PATRIC: 387659.5
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Marixanthomonas ophiurae strain KMM 3046 PATRIC: 387659.5
[Ref.: #69480]	gram-positive	no	98.709	yes
[Ref.: #69480]	anaerobic	no	99.125	yes
[Ref.: #69480]	halophile	yes	74.072	no
[Ref.: #69480]	spore-forming	no	95.958	yes
[Ref.: #69480]	glucose-util	yes	78.832	no
[Ref.: #69480]	aerobic	yes	92.86	yes
[Ref.: #69480]	motile	no	87.159	yes
[Ref.: #69480]	thermophile	no	99.564	no
[Ref.: #69480]	flagellated	no	95.235	yes
[Ref.: #69480]	glucose-ferment	no	91.857	no

Availability in culture collections External links

[Ref.: #31925]

Culture collection no.

NRIC 0684, JCM 14121, KMM 3046, CIP 109555

[Ref.: #91814]

SI-ID 297232

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Constantimarinum furrinae gen. nov., sp. nov., a marine bacterium isolated from saline volcanic rock aquifer (lava seawater) at Jeju Island, Republic of Korea.	Yang SH, Oh HM, Park MJ, Jang D, Kwon KK	J Microbiol	10.1007/s12275-022-1468-6	2021	*
Phylogeny	Marixanthomonas spongiae sp. nov., isolated from marine sponge.	Zhuang L, Pang H, Xu L, Chen D	Int J Syst Evol Microbiol	10.1099/ijsem.0.004968	2021	*
Phylogeny	Marixanthomonas ophiurae gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from a deep-sea brittle star.	Romanenko LA, Uchino M, Frolova GM, Mikhailov VV	Int J Syst Evol Microbiol	10.1099/ijs.0.64662-0	2007	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31925

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28182 (see below)

#37764 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91814

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297232.1 )

#121426 Collection of Institut Pasteur ; Curators of the CIP; CIP 109555

#28182

IJSEM 457 2007 ( DOI 10.1099/ijs.0.64662-0 , PubMed 17329768 )

* These data were automatically processed and therefore are not curated

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Marixanthomonas ophiurae strain KMM 3046

Marixanthomonas ophiurae strain KMM 3046

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