Flagellimonas eckloniae (KCCM 42307, JCM 13831, DOKDO 007)

Name: Flagellimonas eckloniae (KCCM 42307, JCM 13831, DOKDO 007)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134211

Type strain

Culture col. no. KCCM 42307 JCM 13831 DOKDO 007

NCBI tax ID(s) 346185

Special Collections JCM Literature strains

History JCM <-- K. K. Kwon DOKDO 007.

Links

Flagellimonas eckloniae KCCM 42307 is an aerobe, Gram-negative, motile bacterium that was isolated from seawater.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 28047

KCTC 22266,JCM 13831

@ref 20215

Last LPSN update 2026-05-29 08:38:16

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Flagellimonas

Species Flagellimonas eckloniae

Full scientific name Flagellimonas eckloniae Bae et al. 2007

Synonyms (2)

Allomuricauda eckloniae
Muricauda eckloniae

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
31868	negative	1.7 µm	0.28 µm	rod-shaped

Pigmentation

31868

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
31868	positive	growth	17-36
31868	positive	optimum	27.5
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
31868	positive	optimum	8
31868	positive	growth	07-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31868	aerobe
125439	facultative anaerobe	92.49

Spore formation

@ref	Spore formation	Confidence
31868
125439		95.4

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31868	NaCl	positive	growth	1.9-5.4 %
31868	NaCl	positive	optimum	2.9 %

Observation

67770

Observationquinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31868	18240 ChEBI	4-hydroxy-L-proline	+	carbon source
31868	16449 ChEBI	alanine	+	carbon source
31868	22653 ChEBI	asparagine	+	carbon source
31868	35391 ChEBI	aspartate	+	carbon source
31868	17057 ChEBI	cellobiose	+	carbon source
31868	23652 ChEBI	dextrin	+	carbon source
31868	28757 ChEBI	fructose	+	carbon source
31868	33984 ChEBI	fucose	+	carbon source
31868	28260 ChEBI	galactose	+	carbon source
31868	5291 ChEBI	gelatin	+	carbon source
31868	17234 ChEBI	glucose	+	carbon source
31868	29987 ChEBI	glutamate	+	carbon source
31868	28087 ChEBI	glycogen	+	carbon source
31868	21217 ChEBI	L-alaninamide	+	carbon source
31868	24996 ChEBI	lactate	+	carbon source
31868	25017 ChEBI	leucine	+	carbon source
31868	17306 ChEBI	maltose	+	carbon source
31868	37684 ChEBI	mannose	+	carbon source
31868	28053 ChEBI	melibiose	+	carbon source
31868	37657 ChEBI	methyl D-glucoside	+	carbon source
31868	50048 ChEBI	phenylethylamine	+	carbon source
31868	26271 ChEBI	proline	+	carbon source
31868	16634 ChEBI	raffinose	+	carbon source
31868	26546 ChEBI	rhamnose	+	carbon source
31868	30031 ChEBI	succinate	+	carbon source
31868	17992 ChEBI	sucrose	+	carbon source
31868	26986 ChEBI	threonine	+	carbon source
31868	27082 ChEBI	trehalose	+	carbon source
31868	27248 ChEBI	urocanic acid	+	carbon source

Enzymes

@ref	Value	Activity	Ec
31868	catalase	+	1.11.1.6
31868	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Host species
31868	seawater
67770	Rhizosphere of the marine alga Ecklonia kurome	Ecklonia kurome

Taxonmaps

69479

Global distribution of 16S sequence KM461123 (>99% sequence identity) for Muricauda eckloniae subclade from Microbeatlas

Aquatic Samples	2048
Soil Samples	66
Animal Samples	111
Plant Samples	11
Total Samples	2236

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM141395v1 assembly for Flagellimonas eckloniae DOKDO 007	contig	GCA_001413955	346185.7	2622736625	346185	77.21

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
31868	Flagellimonas eckloniae strain DOKDO 007 16S ribosomal RNA gene, partial sequence	DQ191180	1484		346185
67770	Flagellimonas eckloniae strain DOKDO 007 16S ribosomal RNA gene, partial sequence	KM461123	1457		346185

GC content

@ref	GC-content (mol%)	Method
31868	56.3
67770	56.3	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM141395v1 assembly for Flagellimonas eckloniae DOKDO 007
NCBI: GCA_001413955

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	92.49	no
125439	gram_stain	BacteriaNetⓘ	negative	87.26	no
125439	motility	BacteriaNetⓘ	no	81.71	no
125439	spore_formation	BacteriaNetⓘ	no	95.40	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes.	Garcia-Lopez M, Meier-Kolthoff JP, Tindall BJ, Gronow S, Woyke T, Kyrpides NC, Hahnke RL, Goker M.	Front Microbiol	10.3389/fmicb.2019.02083	2019
	Characterization of two novel species of the genus Flagellimonas reveals the key role of vertical inheritance in the evolution of alginate utilization loci.	Yu J, Gao J-W, Cao K, He D-Y, Xu L, Fu G-Y, Sun C.	Microbiol Spectr	10.1128/spectrum.00917-25	2025
	Muricauda okinawensis sp. Nov. and Muricauda yonaguniensis sp. Nov., Two Marine Bacteria Isolated from the Sediment Core near Hydrothermal Fields of Southern Okinawa Trough.	Cao W, Deng X, Jiang M, Zeng Z, Chang F.	Microorganisms	10.3390/microorganisms11061580	2023
	Structural and functional characterization of the novel endo-alpha(1,4)-fucoidanase Mef1 from the marine bacterium Muricauda eckloniae.	Mikkelsen MD, Tran VHN, Meier S, Nguyen TT, Holck J, Cao HTT, Van TTT, Thinh PD, Meyer AS, Morth JP.	Acta Crystallogr D Struct Biol	10.1107/s2059798323008732	2023
	The Endo-alpha(1,3)-Fucoidanase Mef2 Releases Uniquely Branched Oligosaccharides from Saccharina latissima Fucoidans.	Tran VHN, Nguyen TT, Meier S, Holck J, Cao HTT, Van TTT, Meyer AS, Mikkelsen MD.	Mar Drugs	10.3390/md20050305	2022
	Bacterial diversity associated with the tunic of the model chordate Ciona intestinalis.	Blasiak LC, Zinder SH, Buckley DH, Hill RT.	ISME J	10.1038/ismej.2013.156	2014
Phylogeny	Flagellimonas eckloniae gen. nov., sp. nov., a mesophilic marine bacterium of the family Flavobacteriaceae, isolated from the rhizosphere of Ecklonia kurome.	Bae SS, Kwon KK, Yang SH, Lee HS, Kim SJ, Lee JH.	Int J Syst Evol Microbiol	10.1099/ijs.0.64565-0	2007
Phylogeny	Flagellimonas maritima sp. nov., isolated from surface seawater.	Kang H, Kim H, Cha I, Joh K.	Int J Syst Evol Microbiol	10.1099/ijsem.0.003733	2020
Phylogeny	Flagellimonas aquimarina sp. nov., and transfer of Spongiibacterium flavum Yoon and Oh 2012 and S. pacificum Gao et al. 2015 to the genus Flagellimonas Bae et al. 2007 as Flagellimonas flava comb. nov. and F. pacifica comb. nov., respectively.	Choi S, Lee JH, Kang JW, Choe HN, Seong CN.	Int J Syst Evol Microbiol	10.1099/ijsem.0.002975	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28128	IJSEM 1050 2007 ( DOI 10.1099/ijs.0.64565-0 , PubMed 17473257 )
#31868	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28128
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Flagellimonas eckloniae (KCCM 42307, JCM 13831, DOKDO 007)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_001413955

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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