Hymenobacter soli (KCTC 12607, LMG 24240, PB17)

Name: Hymenobacter soli (KCTC 12607, LMG 24240, PB17)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134203

Type strain

Strain Designation PB17

Culture col. no. KCTC 12607 LMG 24240 PB17 UCCCB21

NCBI tax ID(s) 373890

Special Collections KCTC Literature strains UCCCB

History <- ST Lee, KAIST Lee S.-T., Korea Advanced Institute of Science and Technology (KAIST) < Kim K.-H., Department of Biological Sciences Korea Advanced Institute of Science and Technology

Links

Hymenobacter soli PB17 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil.

Gram-negative rod-shaped aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 309162

LMG 24240,KCTC 12607,LMG 23481,LMG 24002

@ref 20215

Last LPSN update 2026-02-09 11:32:08

Domain Bacteria

Phylum Bacteroidota

Class Cytophagia

Order Cytophagales

Family Hymenobacteraceae

Genus Hymenobacter

Species Hymenobacter soli

Full scientific name Hymenobacter soli Kim et al. 2008

Synonyms (1)

"Siccationidurans soli"

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
31830	negative	3 µm	0.8 µm	rod-shaped
67771				rod-shaped
67771	negative

Pigmentation

31830

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
31830	positive	growth	04-30
67771	positive	growth	30
67772	positive	minimum	4
67772	positive	optimum	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
31830	aerobe
67771	aerobe

Spore formation

@ref	Spore formation
31830
67771

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31830	NaCl	positive	growth	<1 %

Observation

67771

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31830	58143 ChEBI	5-dehydro-D-gluconate	+	carbon source
31830	28260 ChEBI	galactose	+	carbon source
31830	17754 ChEBI	glycerol	+	carbon source
31830	37684 ChEBI	mannose	+	carbon source
31830	33942 ChEBI	ribose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
31830	acid phosphatase	+	3.1.3.2
31830	alkaline phosphatase	+	3.1.3.1
31830	alpha-galactosidase	+	3.2.1.22
31830	catalase	+	1.11.1.6
31830	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
31830	soil
67771	From grass soil		Daejeon	Republic of Korea	KOR	Asia
67772	Grass soil	2004	North Chungcheong Province, Daejeon	Republic of Korea	KOR	Asia

Interaction and safety

Risk assessment

67772

Biosafety level1

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
31830	Hymenobacter soli gene for 16S rRNA, partial sequence	AB251884	1473		373890

GC content

31830

GC-content (mol%)58.8

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hymenobacter terrigena sp. nov., isolated from soil.	Ohn JE, Ten LN, Park KI, Kim BO, Han JS, Jung HY	J Microbiol	10.1007/s12275-018-8029-z	2018
Phylogeny	Hymenobacter soli sp. nov., isolated from grass soil.	Kim KH, Im WT, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.64447-0	2008

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28096	IJSEM 941 2008 ( DOI 10.1099/ijs.0.64447-0 , PubMed 18398199 )
#31830	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28096
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#67772	The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Hymenobacter soli (KCTC 12607, LMG 24240, PB17)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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