Name: Myroides pelagicus SM1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134199

Type strain:

Species: Myroides pelagicus

Strain Designation: SM1

Culture col. no.: IAM 15337, KCTC 12661, CCUG 55494, CIP 109324, JCM 21782, NBRC 102469

Strain history: CIP <- 2006, IAM

NCBI tax ID(s): 270914 (species)

SI-ID 297255

IAM 15337, KCTC 12661, CCUG 0115, JCM 21782, NBRC 102469, CIP 109324, CCUG 55494

Section

Myroides pelagicus SM1 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Seawater.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Myroides*
	Species	**Myroides pelagicus**
	Full Scientific Name (LPSN)	Myroides pelagicus Yoon et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #31808]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #121650]	Gram stain	negative

[Ref.: #31808]	Cell length	0.5-1 µm

[Ref.: #31808]	Cell width	0.2-0.3 µm

[Ref.: #31808]	Cell shape	rod-shaped
[Ref.: #121650]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #31808]	Motility	no
[Ref.: #121650]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #31808]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #33292]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #33292]

Culture medium growth

[Ref.: #33292]

Culture medium composition

expand / minimize

[Ref.: #121650]

Culture medium

CIP Medium 368

[Ref.: #121650]

Culture medium growth

[Ref.: #121650]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #121650]

Culture medium

CIP Medium 72

[Ref.: #121650]

Culture medium growth

[Ref.: #121650]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #31808]	growth	10-37 °C
[Ref.: #31808]	optimum	30-37 °C
[Ref.: #33292]	growth	30 °C
[Ref.: #60612]	growth	30 °C
[Ref.: #67770]	growth	25 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #31808]	Temperature range	mesophilic
[Ref.: #33292]	Temperature range	mesophilic
[Ref.: #60612]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31808]			optimum	07-08
[Ref.: #31808]			growth	05-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31808]	Oxygen tolerance	aerobe
[Ref.: #60612]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe
[Ref.: #121650]	Oxygen tolerance	obligate aerobe

[Ref.: #31808]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31808]		NaCl		growth	0-9	%

[Ref.: #31808]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-6
[Ref.: #67771]	Observation	quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31808]	acetate ChEBI	+	carbon source
[Ref.: #31808]	alanine ChEBI	+	carbon source
[Ref.: #31808]	asparagine ChEBI	+	carbon source
[Ref.: #31808]	aspartate ChEBI	+	carbon source
[Ref.: #31808]	glutamate ChEBI	+	carbon source
[Ref.: #31808]	glycogen ChEBI	+	carbon source
[Ref.: #31808]	lactate ChEBI	+	carbon source
[Ref.: #31808]	leucine ChEBI	+	carbon source
[Ref.: #31808]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #121650]	nitrate ChEBI	-	reduction
[Ref.: #121650]	nitrite ChEBI	+	reduction
[Ref.: #31808]	ornithine ChEBI	+	carbon source
[Ref.: #31808]	proline ChEBI	+	carbon source
[Ref.: #31808]	serine ChEBI	+	carbon source
[Ref.: #31808]	succinate ChEBI	+	carbon source
[Ref.: #31808]	threonine ChEBI	+	carbon source
[Ref.: #31808]	uridine ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #121650]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #31808]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #31808]	catalase	+	1.11.1.6
[Ref.: #121650]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #31808]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #31808]	gelatinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121650]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #121650]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #60612]

Fatty acid	Percentage	ECL
C15:0 ISO	57.7	14.621
C17:1 ω9c ISO	14.1	16.416
C13:0 iso	7.5	12.612
C17:0 iso 3OH	7.3	18.161
C15:0 ISO 3OH	4.2	16.135
unknown 13.566	3.1	13.566
C16:1 ω7c	0.9	15.819
C16:0 3OH	0.9	17.52
unknown 16.580	0.8	16.58
C16:0 iso	0.8	15.626
C15:0 ANTEISO	0.7	14.711
Unidentified	0.5	11.554
C15:0	0.5	15
C18:2 ω6,9c/C18:0 ANTE	0.4	17.724
Unidentified	0.4	12.944
C16:0	0.4	16

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121650]	11790	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #60612]	Sample type/isolated from	Seawater
[Ref.: #60612]	Country	Thailand
[Ref.: #60612]	Country ISO 3 Code	THA
[Ref.: #60612]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Seawater, off the coast of Thailand
[Ref.: #67770]	Country	Thailand
[Ref.: #67770]	Country ISO 3 Code	THA
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From seawater
[Ref.: #67771]	Geographic location (country and/or sea, region)	off the coast of Thiland
[Ref.: #67771]	Country	Thailand
[Ref.: #67771]	Country ISO 3 Code	THA
[Ref.: #67771]	Continent	Asia

[Ref.: #121650]	Sample type/isolated from	Environment, Seawater
[Ref.: #121650]	Country	Thailand
[Ref.: #121650]	Country ISO 3 Code	THA
[Ref.: #121650]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB176662 (>99% sequence identity) for Myroides pelagicus from Microbeatlas

Aquatic Samples	148
Soil Samples	98
Animal Samples	352
Plant Samples	17
Total Samples	615

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #121650]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31808]	Myroides pelagicus gene for 16S rRNA	AB176662	1486	GenBank	270914 tax ID

[Ref.: #31808]	GC-content	33.6 mol%
[Ref.: #67771]	GC-content	33.6 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #31808]

Culture collection no.

IAM 15337, KCTC 12661, CCUG 55494, CIP 109324, JCM 21782, NBRC 102469

[Ref.: #91794]

SI-ID 297255

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Myroides injenensis sp. nov., a new member isolated from human urine.	Paek J, Shin JH, Shin Y, Park IS, Jin TE, Kook JK, Wie SH, Cho HG, Park SJ, Chang YH	Antonie Van Leeuwenhoek	10.1007/s10482-014-0317-y	2014	*
Phylogeny	Myroides pelagicus sp. nov., isolated from seawater in Thailand.	Yoon J, Maneerat S, Kawai F, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.64336-0	2006	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31808

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28077 (see below)

#33292 ; Curators of the CIP;
#60612 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55494
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91794

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297255.1 )

#121650 Collection of Institut Pasteur ; Curators of the CIP; CIP 109324

#28077

IJSEM 1917 2006 ( DOI 10.1099/ijs.0.64336-0 , PubMed 16902031 )

* These data were automatically processed and therefore are not curated

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