Tenacibaculum aestuarii (KCTC 12569, JCM 13491, SMK-4)

Name: Tenacibaculum aestuarii (KCTC 12569, JCM 13491, SMK-4)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134198

Type strain

Strain Designation SMK-4

Culture col. no. KCTC 12569 JCM 13491 SMK-4 CIP 109328 DSM 113392 2 more

NCBI tax ID(s) 362781

Special Collections JCM KCTC CIP Literature strains DSMZ

Links

Tenacibaculum aestuarii SMK-4 is an aerobe, Gram-negative, motile prokaryote that was isolated from tidal flat sediment.

Gram-negative motile rod-shaped aerobe 16S sequence

Name and taxonomic classification

SI-ID 297336

DSM 113392,JCM 13491,KCTC 12569,CIP 109328

@ref 20215

Last LPSN update 2025-12-16 10:01:59

Domain Pseudomonadati

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Tenacibaculum

Species Tenacibaculum aestuarii

Full scientific name Tenacibaculum aestuarii Jung et al. 2006

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement
31796	negative	2-3.5 µm	0.3 µm	rod-shaped	gliding
67771				rod-shaped
67771	negative

Pigmentation

31796

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
68880	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
31796	positive	growth	09-41
31796	positive	optimum	30-37	mesophilic
67770	positive	growth	30	mesophilic
67771	positive	growth	30	mesophilic
68880	positive	growth	28	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
31796	positive	optimum	7.5-8.5
31796	positive	growth	5.5-8.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
31796	aerobe
67771	aerobe

Spore formation

31796

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31796	NaCl	positive	growth	0-7 %
31796	NaCl	positive	optimum	0-7 %

Observation

@ref	Observation
31796	aggregates in chains
67770	quinones: MK-6
67771	quinones: MK-6

Enzymes

@ref	Value	Activity	Ec
31796	acid phosphatase	+	3.1.3.2
31796	alkaline phosphatase	+	3.1.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Tidal flat
#Environmental	#Terrestrial	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
31796	tidal flat sediment
67770	Tidal flat sediment at Saemankum	Pyunsan	Republic of Korea	KOR	Asia
67771	From gaetbul		Republic of Korea	KOR	Asia
68880	tidal flat sediment	Saemankum, Pyunsan	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence DQ314760 (>99% sequence identity) for Tenacibaculum aestuarii from Microbeatlas

Aquatic Samples	265
Soil Samples	2
Animal Samples	13
Plant Samples	1
Total Samples	281

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
68880	1	Risk group (German classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
31796	Tenacibaculum aestuarii strain SMK-4 16S ribosomal RNA gene, partial sequence	DQ314760	1473		362781

GC content

@ref	GC-content (mol%)	Method
31796	33.6
67770	33.6	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Stress	Consuming fresh macroalgae induces specific catabolic pathways, stress reactions and Type IX secretion in marine flavobacterial pioneer degraders.	Brunet M, Le Duff N, Barbeyron T, Thomas F	ISME J	10.1038/s41396-022-01251-6	2022
Phylogeny	Tenacibaculum caenipelagi sp. nov., a member of the family Flavobacteriaceae isolated from tidal flat sediment.	Park S, Yoon JH	Antonie Van Leeuwenhoek	10.1007/s10482-013-9941-1	2013
Phylogeny	Tenacibaculum aiptasiae sp. nov., isolated from a sea anemone Aiptasia pulchella.	Wang JT, Chou YJ, Chou JH, Chen CA, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.65437-0	2008
Phylogeny	Tenacibaculum adriaticum sp. nov., from a bryozoan in the Adriatic Sea.	Heindl H, Wiese J, Imhoff JF	Int J Syst Evol Microbiol	10.1099/ijs.0.65383-0	2008
Phylogeny	Tenacibaculum todarodis sp. nov., isolated from a squid.	Shin SK, Kim E, Yi H	Int J Syst Evol Microbiol	10.1099/ijsem.0.002692	2018
Phylogeny	Tenacibaculum xiamenense sp. nov., an algicidal bacterium isolated from coastal seawater.	Li Y, Wei J, Yang C, Lai Q, Chen Z, Li D, Zhang H, Tian Y, Zheng W, Zheng T	Int J Syst Evol Microbiol	10.1099/ijs.0.050765-0	2013
Phylogeny	Tenacibaculum halocynthiae sp. nov., a member of the family Flavobacteriaceae isolated from sea squirt Halocynthia roretzi.	Kim YO, Park S, Nam BH, Jung YT, Kim DG, Jee YJ, Yoon JH	Antonie Van Leeuwenhoek	10.1007/s10482-013-9913-5	2013
Phylogeny	Maritimimonas rapanae gen. nov., sp. nov., isolated from gut microflora of the veined rapa whelk, Rapana venosa.	Park SC, Baik KS, Kim D, Seong CN	Int J Syst Evol Microbiol	10.1099/ijs.0.010504-0	2009
Phylogeny	Tenacibaculum aestuarii sp. nov., isolated from a tidal flat sediment in Korea.	Jung SY, Oh TK, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.64302-0	2006

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28067	IJSEM 1577 2006 ( DOI 10.1099/ijs.0.64302-0 , PubMed 16825632 )
#31796	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28067
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68880	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 113392
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Tenacibaculum aestuarii (KCTC 12569, JCM 13491, SMK-4)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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