Name: Pedobacter aquatilis AR107
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134188

Type strain:

Species: Pedobacter aquatilis

Strain Designation: AR107

Culture col. no.: CCM 7347, CECT 7114, JCM 13454, CCUG 53834, NCIMB 14493

Strain history: A. Ventosa AR107.

NCBI tax ID(s): 351343 (species)

SI-ID 297282

CCM 7347, CECT 7114, JCM 13454, CCUG 53834

Section

Pedobacter aquatilis AR107 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from drinking water.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Pedobacter*
	Species	**Pedobacter aquatilis**
	Full Scientific Name (LPSN)	Pedobacter aquatilis Gallego et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #31748]	Gram stain	negative

[Ref.: #31748]	Cell length	02-06 µm

[Ref.: #31748]	Cell width	0.8-1 µm

[Ref.: #31748]	Cell shape	rod-shaped

[Ref.: #31748]	Motility	no

[Ref.: #31748]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #31748]	growth	04-30 °C
[Ref.: #31748]	optimum	25-28 °C
[Ref.: #60032]	growth	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #31748]	Temperature range	mesophilic
[Ref.: #60032]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31748]			optimum	06-07
[Ref.: #31748]			growth	05-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31748]	Oxygen tolerance	aerobe
[Ref.: #60032]	Oxygen tolerance	aerobe

[Ref.: #31748]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31748]		NaCl		growth	0-1	%
[Ref.: #31748]		NaCl		optimum	0-1	%

[Ref.: #31748]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #31748]	arabinose ChEBI	+	carbon source
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #31748]	fructose ChEBI	+	carbon source
[Ref.: #31748]	galactose ChEBI	+	carbon source
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #31748]	glucose ChEBI	+	carbon source
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #31748]	lactose ChEBI	+	carbon source
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #31748]	maltose ChEBI	+	carbon source
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #31748]	mannose ChEBI	+	carbon source
[Ref.: #31748]	melibiose ChEBI	+	carbon source
[Ref.: #31748]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #31748]	raffinose ChEBI	+	carbon source
[Ref.: #31748]	rhamnose ChEBI	+	carbon source
[Ref.: #31748]	salicin ChEBI	+	carbon source
[Ref.: #31748]	sucrose ChEBI	+	carbon source
[Ref.: #31748]	trehalose ChEBI	+	carbon source
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE, API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #31748]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #31748]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #60032]	8408	-	-	-	-	-	+	-	+	+	+	+	-	+	+	-	-	-	-	-	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #60032]	4336	-	+	-	+	-	+	+	-	+	-	+	+	-	-	-	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31748]	Sample type/isolated from	drinking water

[Ref.: #60032]	Sample type/isolated from	Water,drinking
[Ref.: #60032]	Sampling date	2004-01-01
[Ref.: #60032]	Geographic location (country and/or sea, region)	Sevilla
[Ref.: #60032]	Country	Spain
[Ref.: #60032]	Country ISO 3 Code	ESP
[Ref.: #60032]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Drinking water distribution system of Seville
[Ref.: #67770]	Country	Spain
[Ref.: #67770]	Country ISO 3 Code	ESP
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Freshwater

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31748]	Pedobacter aquatilis partial 16S rRNA gene, type strain AR107T	AM114396	1450	GenBank	351343 tax ID

[Ref.: #31748]	GC-content	38 mol%
[Ref.: #67770]	GC-content	38 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #31748]

Culture collection no.

CCM 7347, CECT 7114, JCM 13454, CCUG 53834, NCIMB 14493

[Ref.: #91783]

SI-ID 297282

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pedobacter panacis sp. nov., isolated from Panax ginseng soil.	Singh P, Singh H, Kim YJ, Yang DC	Antonie Van Leeuwenhoek	10.1007/s10482-016-0794-2	2016	*
Phylogeny	Pedobacter jejuensis sp. nov., isolated from soil of a pine grove, and emended description of the genus Pedobacter.	Kook M, Park Y, Yi TH	Int J Syst Evol Microbiol	10.1099/ijs.0.058024-0	2014	*
Phylogeny	Pedobacter aquatilis sp. nov., isolated from drinking water, and emended description of the genus Pedobacter.	Gallego V, Garcia MT, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijs.0.64176-0	2006	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31748

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28022 (see below)

#60032 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53834
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#91783

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297282.1 )

#28022

IJSEM 1853 2006 ( DOI 10.1099/ijs.0.64176-0 , PubMed 16902020 )

* These data were automatically processed and therefore are not curated

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