Name: Rickettsia tamurae AT-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134183

Type strain:

Species: Rickettsia tamurae

Strain Designation: AT-1

Culture col. no.: CSUR R1

NCBI tax ID(s): 334545 (species)

Section

Rickettsia tamurae AT-1 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from ticks.

Gram-negative
rod-shaped
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rickettsiales*
	Family	*Rickettsiaceae*
	Genus	*Rickettsia*
	Species	**Rickettsia tamurae**
	Full Scientific Name (LPSN)	Rickettsia tamurae Fournier et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #31730]	Gram stain	negative

[Ref.: #31730]	Cell shape	rod-shaped

[Ref.: #31730]	Motility	no

[Ref.: #31730]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #31730]			growth	32 °C
[Ref.: #31730]			optimum	32 °C

[Ref.: #31730]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #31730]			optimum	7
[Ref.: #31730]			growth	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31730]

Ability of spore formation

[Ref.: #31730]

Observation

aggregates in chains

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31730]	Sample type/isolated from	ticks
* marker position based on {}

Isolation sources categories

#Host

#Arthropoda

#Tick

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY049981 (>99% sequence identity) for Rickettsia from Microbeatlas

Aquatic Samples	40
Soil Samples	77
Animal Samples	668
Plant Samples	20
Total Samples	805

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31730]	Rickettsia tamurae strain AT-1 16S ribosomal RNA gene, partial sequence	AY049981	1440	GenBank	334545 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rickettsia tamurae AT-1	GCA_000751075	contig	GenBank	334545 tax ID	*
[Ref.: #66792]	Rickettsia tamurae AT-1	2617271228	draft	JGI IMG/M	334545 tax ID	*

Availability in culture collections External links

[Ref.: #31730]

Culture collection no.

CSUR R1

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phylogenetic Studies of Coxiella-Like Bacteria and Spotted Fever Group Rickettsiae in Ticks Collected From Vegetation in Chaiyaphum Province, Thailand.	Usananan P, Kaenkan W, Sudsangiem R, Baimai V, Trinachartvanit W, Ahantarig A	Front Vet Sci	10.3389/fvets.2022.849893	2022	*
Phylogeny	Molecular evidence of Candidatus Rickettsia longicornii and a novel Rickettsia strain from ticks in Southern China.	Yuan TT, Du CH, Xia LY, Que TC, von Fricken ME, Jiang BG, Wei W, Li LF, Liu HB, Wang Q, Zhao L, Li J, Cui XM, Sun Y, Jia N, Cao WC, Jiang JF	Ticks Tick Borne Dis	10.1016/j.ttbdis.2021.101679	2021	*
Genetics	Genome Sequence of "Candidatus Rickettsia colombianensi," a Novel Tick-Associated Bacterium Distributed in Colombia.	Miranda J, Mattar S, Puerta-Gonzalez A, Muskus C, Oteo JA	Microbiol Resour Announc	10.1128/MRA.01433-18	2019	*
Genetics	Genome Sequence of Rickettsia tamurae, a Recently Detected Human Pathogen in Japan.	Sentausa E, El Karkouri K, Michelle C, Caputo A, Raoult D, Fournier PE	Genome Announc	10.1128/genomeA.00838-14	2014	*
Phylogeny	Detection of Rickettsia tamurae DNA in ticks and wild boar (Sus scrofa leucomystax) skins in Shimane Prefecture, Japan.	Motoi Y, Asano M, Inokuma H, Ando S, Kawabata H, Takano A, Suzuki M	J Vet Med Sci	10.1292/jvms.12-0299	2012	*
Phylogeny	Identification of spotted fever group Rickettsia species by polymerase chain reaction-restriction fragment length polymorphism analysis of the sca4 gene.	Matsumoto K, Inokuma H	Vector Borne Zoonotic Dis	10.1089/vbz.2008.0098	2009	*
Phylogeny	Rickettsia tamurae sp. nov., isolated from Amblyomma testudinarium ticks.	Fournier PE, Takada N, Fujita H, Raoult D	Int J Syst Evol Microbiol	10.1099/ijs.0.64134-0	2006	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31730

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28006 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#28006

IJSEM 1673 2006 ( DOI 10.1099/ijs.0.64134-0 , PubMed 16825648 )

* These data were automatically processed and therefore are not curated

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