Name: Roseivirga halotolerans UST030701-097
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 134177

Type strain:

Species: Roseivirga halotolerans

Strain Designation: UST030701-097

Culture col. no.: NRRL B-41220, JCM 13334, CIP 109252, DSM 113472

Strain history: CIP <- 2006, JCM <- S. Lau: strain UST030701-097

NCBI tax ID(s): 333139 (species)

SI-ID 291130

JCM 13334, NRRL B-41220, CIP 109252, DSM 113472

Special Collections

Section

Roseivirga halotolerans UST030701-097 is an aerobe, Gram-negative, motile bacterium that was isolated from marine sponge.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Roseivirgaceae*
	Genus	*Roseivirga*
	Species	**Roseivirga halotolerans**
	Full Scientific Name (LPSN)	Roseivirga halotolerans (Lau et al. 2006) García-López et al. 2020

Synonym

Fabibacter halotolerans

Information on morphological and physiological properties Morphology

[Ref.: #31713]	Gram stain	negative
[Ref.: #119825]	Gram stain	negative

[Ref.: #31713]	Cell length	1.5 µm

[Ref.: #31713]	Cell width	0.5 µm

[Ref.: #31713]	Cell shape	rod-shaped
[Ref.: #119825]	Cell shape	rod-shaped

[Ref.: #31713]	Motility	yes
[Ref.: #119825]	Motility	yes

[Ref.: #31713]	Flagellum arrangement	gliding

[Ref.: #31713]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #68879]

Culture medium

MARINE BROTH (ROTH CP73) (DSMZ Medium 514f)

[Ref.: #68879]

Culture medium growth

[Ref.: #68879]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #119825]

Culture medium

CIP Medium 13

[Ref.: #119825]

Culture medium growth

[Ref.: #119825]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #31713]	growth	12-36 °C
[Ref.: #31713]	optimum	28-30 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #68879]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #31713]			optimum	07-10
[Ref.: #31713]			growth	05-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31713]

Oxygen tolerance

aerobe

[Ref.: #31713]	Ability of spore formation	no
[Ref.: #119825]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31713]		NaCl		growth	0-12	%

[Ref.: #31713]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #31713]	alanine ChEBI	+	carbon source
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #31713]	aspartate ChEBI	+	carbon source
[Ref.: #31713]	cellobiose ChEBI	+	carbon source
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #31713]	dextrin ChEBI	+	carbon source
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #31713]	galactose ChEBI	+	carbon source
[Ref.: #31713]	galacturonate ChEBI	+	carbon source
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #31713]	glucose ChEBI	+	carbon source
[Ref.: #31713]	glutamate ChEBI	+	carbon source
[Ref.: #31713]	glycogen ChEBI	+	carbon source
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #31713]	lactate ChEBI	+	carbon source
[Ref.: #31713]	lactose ChEBI	+	carbon source
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #31713]	maltose ChEBI	+	carbon source
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #31713]	melibiose ChEBI	+	carbon source
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #31713]	ornithine ChEBI	+	carbon source
[Ref.: #31713]	proline ChEBI	+	carbon source
[Ref.: #31713]	raffinose ChEBI	+	carbon source
[Ref.: #31713]	sucrose ChEBI	+	carbon source
[Ref.: #31713]	threonine ChEBI	+	carbon source
[Ref.: #31713]	trehalose ChEBI	+	carbon source
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #31713]	catalase	+	1.11.1.6
[Ref.: #31713]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #31713]	25281	+/-	-	-	-	-	+	-	+	+	+	+	+	+	-	+	+	-	+	+	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31713]	Sample type/isolated from	marine sponge

[Ref.: #67770]	Sample type/isolated from	Marine sponge Tedania ignis
[Ref.: #67770]	Host species	Tedania ignis
[Ref.: #67770]	Country	Bahamas
[Ref.: #67770]	Country ISO 3 Code	BHS
[Ref.: #67770]	Continent	North America

[Ref.: #68879]	Sample type/isolated from	Marine sponge Tedania ignis
[Ref.: #68879]	Country	Bahamas
[Ref.: #68879]	Country ISO 3 Code	BHS
[Ref.: #68879]	Continent	Middle and South America

[Ref.: #119825]	Sample type/isolated from	Animal, Marine sponge, Tedania ignis
[Ref.: #119825]	Country	Bahamas
[Ref.: #119825]	Country ISO 3 Code	BHS
[Ref.: #119825]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Invertebrates (Other)	#Porifera (Sponges)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ080995 (>99% sequence identity) for Roseivirga halotolerans subclade from Microbeatlas

Aquatic Samples	309
Soil Samples	3
Animal Samples	20
Plant Samples
Total Samples	332

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #68879]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119825]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31713]	Fabibacter halotolerans strain UST030701-097 16S ribosomal RNA gene, partial sequence	DQ080995	1412	GenBank ENA	333139 tax ID

[Ref.: #31713]	GC-content	42.5 mol%
[Ref.: #67770]	GC-content	42.2-42.8 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #31713]

Culture collection no.

NRRL B-41220, JCM 13334, CIP 109252, DSM 113472

[Ref.: #91775]

SI-ID 291130

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31713

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27989 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#68879

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 113472

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91775

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID291130.1 )

#119825 Collection of Institut Pasteur ; Curators of the CIP; CIP 109252

#27989

IJSEM 1059 2006 ( DOI 10.1099/ijs.0.64104-0 , PubMed 16627655 )

* These data were automatically processed and therefore are not curated

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