Name: Thermomonas koreensis Ko06
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 134173

Type strain:

Species: Thermomonas koreensis

Strain Designation: Ko06

Culture col. no.: KCTC 12540, NBRC 101155

Strain history: <- DC Yang, Kyunghee Univ.

NCBI tax ID(s): 341470 (species)

SI-ID 297351

KCTC 12540, NBRC 101155

Special Collections

Section

Thermomonas koreensis Ko06 is an aerobe, Gram-negative, motile bacterium that was isolated from soil.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Thermomonas*
	Species	**Thermomonas koreensis**
	Full Scientific Name (LPSN)	Thermomonas koreensis Kim et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #31685]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #31685]	Cell length	03-04 µm

[Ref.: #31685]	Cell width	0.7 µm

[Ref.: #31685]	Cell shape	rod-shaped

[Ref.: #31685]	Motility	yes

[Ref.: #31685]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #31685]	growth	20-37 °C
[Ref.: #31685]	optimum	37 °C
[Ref.: #67771]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #31685]			optimum	08-09
[Ref.: #31685]			growth	08-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31685]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #31685]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31685]		NaCl		growth	3	%
[Ref.: #31685]		NaCl		optimum	3	%

[Ref.: #31685]	Observation	aggregates in chains
[Ref.: #67771]	Observation	quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31685]	3-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #31685]	acetate ChEBI	+	carbon source
[Ref.: #31685]	alanine ChEBI	+	carbon source
[Ref.: #31685]	glucose ChEBI	+	carbon source
[Ref.: #31685]	maltose ChEBI	+	carbon source
[Ref.: #31685]	proline ChEBI	+	carbon source
[Ref.: #31685]	propionate ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31685]		catalase	+	1.11.1.6
[Ref.: #31685]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31685]	Sample type/isolated from	soil

[Ref.: #67771]	Sample type/isolated from	From granules
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ154906 (>99% sequence identity) for Thermomonas from Microbeatlas

Aquatic Samples	4444
Soil Samples	2580
Animal Samples	1459
Plant Samples	325
Total Samples	8808

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31685]	Thermomonas koreensis strain Ko06 16S ribosomal RNA gene, partial sequence	DQ154906	1474	GenBank ENA	341470 tax ID
[Ref.: #124043]	Thermomonas koreensis gene for 16S rRNA, partial sequence, strain: NBRC 101155.	AB681399	1470	GenBank ENA	341470 tax ID	*

[Ref.: #31685]	GC-content	68.3 mol%
[Ref.: #67771]	GC-content	65.26 mol%

Availability in culture collections External links

[Ref.: #31685]

Culture collection no.

KCTC 12540, NBRC 101155

[Ref.: #91771]

SI-ID 297351

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thermomonas carbonis sp. nov., isolated from the soil of a coal mine.	Wang L, Zheng S, Wang D, Wang L, Wang G	Int J Syst Evol Microbiol	10.1099/ijs.0.063800-0	2014	*
Phylogeny	Thermomonas koreensis sp. nov., a mesophilic bacterium isolated from a ginseng field.	Kim MK, Im WT, In JG, Kim SH, Yang DC	Int J Syst Evol Microbiol	10.1099/ijs.0.64049-0	2006	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31685

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27962 (see below)

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91771

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297351.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#27962

IJSEM 1615 2006 ( DOI 10.1099/ijs.0.64049-0 , PubMed 16825638 )

* These data were automatically processed and therefore are not curated

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