Shewanella hafniensis (ATCC BAA-1207, NBRC 100975, P010)

Name: Shewanella hafniensis (ATCC BAA-1207, NBRC 100975, P010)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134162

Type strain

Strain Designation P010

Culture col. no. ATCC BAA-1207 NBRC 100975 P010 CIP 109108

NCBI tax ID(s) 365590

Special Collections Literature strains CIP

History CIP <- 2006, NBRC <- M. Satomi, Japan: strain P010

Links

Shewanella hafniensis P010 is an aerobe, Gram-negative, motile bacterium that was isolated from Cod, Gadus morhua.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 289874

ATCC BAA-1207,NBRC 100975,CIP 109108

@ref 20215

Last LPSN update 2026-05-29 08:38:16

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Shewanellaceae

Genus Shewanella

Species Shewanella hafniensis

Full scientific name Shewanella hafniensis Satomi et al. 2006

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
31629	negative	1-1.2 µm	0.5-0.7 µm	rod-shaped
119784	negative			rod-shaped
125439	negative				99.536

Colony morphology

119784

Hemolysis ability0

Pigmentation

31629

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
37469	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
119784	CIP Medium 13			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
31629	positive	growth	04-25
31629	positive	optimum	25
37469	positive	growth	25

Culture pH

@ref	Ability	Type	PH
31629	positive	optimum	7
31629	positive	growth	7

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31629	aerobe
119784	facultative anaerobe
125439	obligate aerobe	96.241

Spore formation

@ref	Spore formation	Confidence
31629
125439		99.983

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31629	NaCl	positive	growth	0-6 %
31629	NaCl	positive	optimum	0-6 %

Observation

31629

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
31629	16947 ChEBI	citrate	+	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
31629	24265 ChEBI	gluconate	+	carbon source
68371	24265 ChEBI	gluconate	+	builds acid from	from API 50CH acid
31629	17234 ChEBI	glucose	+	carbon source
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
31629	24996 ChEBI	lactate	+	carbon source
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
31629	25115 ChEBI	malate	+	carbon source
31629	17306 ChEBI	maltose	+	carbon source
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
31629	506227 ChEBI	N-acetylglucosamine	+	carbon source
31629	17632 ChEBI	nitrate	+	reduction
119784	17632 ChEBI	nitrate	+	reduction
119784	16301 ChEBI	nitrite	+	reduction
68371	0 ChEBI	Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	0 ChEBI	Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite	Production
119784	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
119784	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	+	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	+	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	+	3.2.1.31	from API zym
31629	catalase	+	1.11.1.6
119784	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
31629	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
119784	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
119784	ornithine decarboxylase	+	4.1.1.17
119784	oxidase	+
68382	trypsin	+	3.4.21.4	from API zym
119784	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119784	-	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
119784	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
119784	Cod, Gadus morhua	Baltic Sea	Denmark	DNK	Europe	2001

Taxonmaps

69479

Global distribution of 16S sequence AB205566 (>99% sequence identity) for Shewanella from Microbeatlas

Aquatic Samples	2
Soil Samples	0
Animal Samples	4
Plant Samples	0
Total Samples	6

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
119784	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM1965533v1 assembly for Shewanella hafniensis ATCC BAA-1207	contig	GCA_019655335	365590.8	8112583751	365590	19.36

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
31629	Shewanella hafniensis gene for 16S rRNA, partial sequence, strain: P010	AB205566	1418		365590
124043	Shewanella hafniensis gene for 16S rRNA, partial sequence, strain: NBRC 100975.	AB681311	1468		365590

GC content

31629

GC-content (mol%)47

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1965533v1 assembly for Shewanella hafniensis ATCC BAA-1207
NCBI: GCA_019655335

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.24	no
125439	gram_stain	BacteriaNetⓘ	negative	99.54	no
125439	motility	BacteriaNetⓘ	yes	86.40	no
125439	spore_formation	BacteriaNetⓘ	no	99.98	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Genetic Environment Surrounding bla_OXA-55-like in Clinical Isolates of Shewanella algae Clade and Enhanced Expression of bla_OXA-55-like in a Carbapenem-Resistant Isolate.	Ohama Y, Aoki K, Harada S, Nagasawa T, Sawabe T, Nonaka L, Moriya K, Ishii Y, Tateda K.	mSphere	10.1128/msphere.00593-21	2021
Genetics	Shewanella oncorhynchi sp. nov., a novel member of the genus Shewanella, isolated from Rainbow Trout (Oncorhynchus mykiss).	Altun S, Duman M, Ay H, Saticioglu IB.	Int J Syst Evol Microbiol	10.1099/ijsem.0.005460	2022
Phylogeny	Shewanella hafniensis sp. nov. and Shewanella morhuae sp. nov., isolated from marine fish of the Baltic Sea.	Satomi M, Vogel BF, Gram L, Venkateswaran K	Int J Syst Evol Microbiol	10.1099/ijs.0.63931-0	2006
Phylogeny	Shewanella basaltis sp. nov., a marine bacterium isolated from black sand.	Chang HW, Roh SW, Kim KH, Nam YD, Jeon CO, Oh HM, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.65725-0	2008

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27914	IJSEM 243 2006 ( DOI 10.1099/ijs.0.63931-0 , PubMed 16403893 )
#31629	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27914
#37469	; Curators of the CIP;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119784	Collection of Institut Pasteur ; Curators of the CIP; CIP 109108
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Shewanella hafniensis (ATCC BAA-1207, NBRC 100975, P010)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_019655335

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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