Name: Nonlabens tegetincola UST030701-324
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134154

Type strain:

Species: Nonlabens tegetincola

Strain Designation: UST030701-324

Culture col. no.: NRRL B-41136, JCM 12886, NBRC 101533

Strain history: S. Lau UST030701-324.

NCBI tax ID(s): 323273 (species)

SI-ID 281461

JCM 12886, NRRL B-41136, NBRC 101533

Section

Nonlabens tegetincola UST030701-324 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from estuarine sediment.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Nonlabens*
	Species	**Nonlabens tegetincola**
	Full Scientific Name (LPSN)	Nonlabens tegetincola Lau et al. 2005

	Synonym	Nonlabens sediminis
	Synonym	Sandarakinotalea sediminis

Information on morphological and physiological properties Morphology

[Ref.: #31561]	Gram stain	negative

[Ref.: #31561]	Cell shape	rod-shaped

[Ref.: #31561]	Motility	no

[Ref.: #31561]

Pigment production

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #31561]	growth	12-44 °C
[Ref.: #31561]	optimum	32 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #31561]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31561]			optimum	7.5
[Ref.: #31561]			growth	05-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31561]

Oxygen tolerance

aerobe

[Ref.: #31561]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31561]		NaCl		growth	02-04	%
[Ref.: #31561]		NaCl		optimum	3	%

[Ref.: #67770]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31561]	tween 20 ChEBI	+	carbon source
[Ref.: #31561]	tween 40 ChEBI	+	carbon source
[Ref.: #31561]	tween 80 ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #31561]	acid phosphatase	+	3.1.3.2
[Ref.: #31561]	alkaline phosphatase	+	3.1.3.1
[Ref.: #31561]	catalase	+	1.11.1.6
[Ref.: #31561]	cytochrome oxidase	+	1.9.3.1
[Ref.: #31561]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31561]	Sample type/isolated from	estuarine sediment

[Ref.: #67770]	Sample type/isolated from	Microbial mat in an estuary
[Ref.: #67770]	Country	Bahamas
[Ref.: #67770]	Country ISO 3 Code	BHS
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Estuary
#Environmental	#Aquatic	#Sediment
#Environmental	#Aquatic	#Brackish

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY987349 (>99% sequence identity) for Nonlabens from Microbeatlas

Aquatic Samples	5409
Soil Samples	126
Animal Samples	721
Plant Samples	29
Total Samples	6285

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31561]	Nonlabens tegetincola strain UST030701-324 16S ribosomal RNA gene, partial sequence	AY987349	1462	GenBank	323273 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Nonlabens tegetincola JCM 12886	GCA_002954355	contig	GenBank	323273 tax ID	*
[Ref.: #66792]	Nonlabens tegetincola strain JCM 12886	323273.9	wgs	PATRIC	323273 tax ID	*

[Ref.: #31561]	GC-content	33.6 mol%
[Ref.: #67770]	GC-content	33.6 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nonlabens tegetincola strain JCM 12886 PATRIC: 323273.9
[Ref.: #69480]	gram-positive	no	97.588	yes
[Ref.: #69480]	anaerobic	no	98.901	yes
[Ref.: #69480]	halophile	no	52.339	no
[Ref.: #69480]	spore-forming	no	94.579	yes
[Ref.: #69480]	glucose-util	yes	81.129	no
[Ref.: #69480]	motile	no	87.684	no
[Ref.: #69480]	flagellated	no	95.7	yes
[Ref.: #69480]	aerobic	yes	90.192	yes
[Ref.: #69480]	thermophile	no	99.002	no
[Ref.: #69480]	glucose-ferment	no	92.156	no

Availability in culture collections External links

[Ref.: #31561]

Culture collection no.

NRRL B-41136, JCM 12886, NBRC 101533

[Ref.: #91752]

SI-ID 281461

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nonlabens tegetincola gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from a microbial mat in a subtropical estuary.	Lau SCK, Tsoi MMY, Li X, Plakhotnikova I, Dobretsov S, Wong PK, Pawlik JR, Qian PY	Int J Syst Evol Microbiol	10.1099/ijs.0.63810-0	2005	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31561

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27851 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#91752

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID281461.1 )

#27851

IJSEM 2279 2005 ( DOI 10.1099/ijs.0.63810-0 , PubMed 16280483 )

* These data were automatically processed and therefore are not curated

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Nonlabens tegetincola strain JCM 12886

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