Nonlabens tegetincola (NRRL B-41136, JCM 12886, UST030701-324)

Name: Nonlabens tegetincola (NRRL B-41136, JCM 12886, UST030701-324)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134154

Type strain

Strain Designation UST030701-324

Culture col. no. NRRL B-41136 JCM 12886 UST030701-324 NBRC 101533

NCBI tax ID(s) 323273

Special Collections JCM Literature strains

History S. Lau UST030701-324.

Links

Nonlabens tegetincola UST030701-324 is an aerobe, Gram-negative, rod-shaped prokaryote that was isolated from estuarine sediment.

Gram-negative rod-shaped aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 281461

JCM 12886,NRRL B-41136,NBRC 101533

@ref 20215

Last LPSN update 2026-02-09 11:32:07

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Nonlabens

Species Nonlabens tegetincola

Full scientific name Nonlabens tegetincola Lau et al. 2005

Synonyms (2)

Sandarakinotalea sediminis
Nonlabens sediminis

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
31561	negative	rod-shaped
125438			91.75
125438	negative		97.535
125439	negative		98

Pigmentation

31561

Productionno

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
31561	positive	growth	12-44
31561	positive	optimum	32	mesophilic
67770	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
31561	positive	optimum	7.5
31561	positive	growth	05-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31561	aerobe
125439	obligate aerobe	95.3

Spore formation

@ref	Spore formation	Confidence
31561
125439		96.5

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31561	NaCl	positive	growth	02-04 %
31561	NaCl	positive	optimum	3 %

Observation

67770

Observationquinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31561	53424 ChEBI	tween 20	+	carbon source
31561	53423 ChEBI	tween 40	+	carbon source
31561	53426 ChEBI	tween 80	+	carbon source

Enzymes

@ref	Value	Activity	Ec
31561	acid phosphatase	+	3.1.3.2
31561	alkaline phosphatase	+	3.1.3.1
31561	catalase	+	1.11.1.6
31561	cytochrome oxidase	+	1.9.3.1
31561	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Estuary
#Environmental	#Aquatic	#Sediment
#Environmental	#Aquatic	#Brackish

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
31561	estuarine sediment
67770	Microbial mat in an estuary	Bahamas	BHS	North America

Taxonmaps

69479

Global distribution of 16S sequence AY987349 (>99% sequence identity) for Nonlabens from Microbeatlas

Aquatic Samples	5409
Soil Samples	126
Animal Samples	721
Plant Samples	29
Total Samples	6285

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM295435v1 assembly for Nonlabens tegetincola JCM 12886	contig	GCA_002954355	323273.9	8075493677	323273	74.09

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
31561	Nonlabens tegetincola strain UST030701-324 16S ribosomal RNA gene, partial sequence	AY987349	1462		323273
124043	Nonlabens tegetincola gene for 16S rRNA, partial sequence, strain: NBRC 101533.	AB681470	1451		323273

GC content

@ref	GC-content (mol%)	Method
31561	33.6
67770	33.6	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Nonlabens tegetincola JCM 12886
NCBI: GCA_002954355

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.50	no
125439	motility	BacteriaNetⓘ	no	55.30	no
125439	gram_stain	BacteriaNetⓘ	negative	98.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Nonlabens tegetincola strain JCM 12886
PATRIC: 323273.9

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.54	no
125438	anaerobic	anaerobicⓘ	no	98.79	yes
125438	spore-forming	spore-formingⓘ	no	89.33	yes
125438	aerobic	aerobicⓘ	yes	88.21	yes
125438	thermophilic	thermophileⓘ	no	97.22	no
125438	flagellated	motile2+ⓘ	no	91.75	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes.	Garcia-Lopez M, Meier-Kolthoff JP, Tindall BJ, Gronow S, Woyke T, Kyrpides NC, Hahnke RL, Goker M.	Front Microbiol	10.3389/fmicb.2019.02083	2019
Phylogeny	Nonlabens tegetincola gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from a microbial mat in a subtropical estuary.	Lau SCK, Tsoi MMY, Li X, Plakhotnikova I, Dobretsov S, Wong PK, Pawlik JR, Qian PY	Int J Syst Evol Microbiol	10.1099/ijs.0.63810-0	2005

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27851	IJSEM 2279 2005 ( DOI 10.1099/ijs.0.63810-0 , PubMed 16280483 )
#31561	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27851
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nonlabens tegetincola (NRRL B-41136, JCM 12886, UST030701-324)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_002954355

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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