Bizionia saleffrena (ACAM 1059, CIP 108534, HFD)

Name: Bizionia saleffrena (ACAM 1059, CIP 108534, HFD)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134127

Type strain

Strain Designation HFD

Culture col. no. ACAM 1059 CIP 108534 HFD

NCBI tax ID(s) 291189

Special Collections CIP Literature strains

History 2004, J. P. Bowman, Tasmania, Australia: strain HFD CIP <- 2004, J. Bowman, Tasmania, Australia: strain HFD

Links

Bizionia saleffrena HFD is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Environment, Sea-ice brine.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 265388

CIP 108534

@ref 20215

Last LPSN update 2026-02-09 11:32:07

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Bizionia

Species Bizionia saleffrena

Full scientific name Bizionia saleffrena Bowman and Nichols 2005

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
31431	negative	3.25 µm	0.45 µm	rod-shaped
125438					93.5
125438	negative				97.481
125439	negative				98.8
122362	negative			rod-shaped

Colony morphology

Pigmentation

31431

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
41685	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
122362	CIP Medium 13			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
31431	positive	optimum	12.5
41685	positive	growth	22
122362	positive	growth	5-30
122362	negative	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31431	aerobe
125439	obligate aerobe	94.2

Spore formation

@ref	Spore formation	Confidence
125439		96

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31431	NaCl	positive	growth	0.2-3 %
31431	NaCl	positive	optimum	1 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
122362	16947 ChEBI	citrate	-	carbon source
122362	4853 ChEBI	esculin	-	hydrolysis
31431	5291 ChEBI	gelatin	+	carbon source
31431	27570 ChEBI	histidine	+	carbon source
122362	17632 ChEBI	nitrate	+	reduction
122362	16301 ChEBI	nitrite	+	reduction
31431	53426 ChEBI	tween 80	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
122362	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
122362	15688 ChEBI	acetoin	-
122362	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
122362	alcohol dehydrogenase	-	1.1.1.1
31431	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
122362	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
122362	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
122362	caseinase	+	3.4.21.50
122362	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
122362	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
122362	gamma-glutamyltransferase	+	2.3.2.2
31431	gelatinase	+
122362	gelatinase	+
122362	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
122362	lipase	+
68382	lipase (C 14)	-		from API zym
122362	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
122362	ornithine decarboxylase	-	4.1.1.17
122362	oxidase	-
122362	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	-	3.4.21.4	from API zym
122362	tryptophan deaminase	-
122362	tween esterase	+
122362	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122362	-	+	+	+	-	+	+	-	-	-	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
122362	Environment, Sea-ice brine	Vestfold hills	Antarctica	ATA	Antarctica	1999

Taxonmaps

69479

Global distribution of 16S sequence AY694005 (>99% sequence identity) for Bizionia from Microbeatlas

Aquatic Samples	121
Soil Samples	2
Animal Samples	9
Plant Samples
Total Samples	132

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
122362	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM808617v1 assembly for Bizionia saleffrena HFD	contig	GCA_008086175	291189.3	2995143675	291189	66.35

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
31431	Bizionia saleffrena strain HFD 16S ribosomal RNA gene, partial sequence	AY694005	1429		291189

GC content

31431

GC-content (mol%)40

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bizionia saleffrena HFD
NCBI: GCA_008086175

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.00	no
125439	motility	BacteriaNetⓘ	no	74.80	no
125439	gram_stain	BacteriaNetⓘ	negative	98.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bizionia saleffrena strain HFD
PATRIC: 291189.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.48	no
125438	anaerobic	anaerobicⓘ	no	96.47	no
125438	spore-forming	spore-formingⓘ	no	87.33	no
125438	thermophilic	thermophileⓘ	no	97.21	no
125438	aerobic	aerobicⓘ	yes	87.15	no
125438	flagellated	motile2+ⓘ	no	93.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bizionia fulviae sp. nov., isolated from the gut of an egg cockle, Fulvia mutica.	Kim HS, Hyun DW, Kim PS, Lee JY, Shin NR, Yun JH, Whon TW, Kim MS, Jung MJ, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.000380	2015
Phylogeny	Novel members of the family Flavobacteriaceae from Antarctic maritime habitats including Subsaximicrobium wynnwilliamsii gen. nov., sp. nov., Subsaximicrobium saxinquilinus sp. nov., Subsaxibacter broadyi gen. nov., sp. nov., Lacinutrix copepodicola gen. nov., sp. nov., and novel species of the genera Bizionia, Gelidibacter and Gillisia.	Bowman JP, Nichols DS	Int J Syst Evol Microbiol	10.1099/ijs.0.63527-0	2005

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27737	IJSEM 1471 2005 ( DOI 10.1099/ijs.0.63527-0 , PubMed 16014468 )
#31431	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27737
#41685	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122362	Collection of Institut Pasteur ; Curators of the CIP; CIP 108534
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bizionia saleffrena (ACAM 1059, CIP 108534, HFD)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_008086175

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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