Treponema porcinum (ATCC BAA-908, CIP 108245, JCM 12342)

Name: Treponema porcinum (ATCC BAA-908, CIP 108245, JCM 12342)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134107

Type strain

Strain Designation 14V28

Culture col. no. ATCC BAA-908 CIP 108245 JCM 12342 14V28

NCBI tax ID(s) 261392

Special Collections JCM CIP Literature strains

Links

Treponema porcinum 14V28 is an anaerobe, motile, spiral-shaped bacterium that was isolated from Swine Faeces.

motile spiral-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 265409

ATCC BAA-908,CIP 108245,JCM 12342

@ref 20215

Last LPSN update 2026-05-29 08:38:15

Domain Bacteria

Phylum Spirochaetota

Class Spirochaetia

Order Spirochaetales

Family Treponemataceae

Genus Treponema

Species Treponema porcinum

Full scientific name Treponema porcinum Nordhoff et al. 2005

Morphology

Cell morphology

@ref	Cell length	Cell width	Cell shape	Motility	Gram stain	Confidence
31355	7 µm	0.3 µm	spiral-shaped
125439					negative	99.747

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
31355	positive	optimum	37

Physiology and metabolism

Oxygen tolerance

31355

Oxygen toleranceanaerobe

Spore formation

@ref	Spore formation	Confidence
125439		99.942

Observation

31355

Observationaggregates in clumps

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31355	17306 ChEBI	maltose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
31355	acid phosphatase	+	3.1.3.2

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	L-lactaldehyde degradation	100	3 of 3
66794	ethanol fermentation	100	2 of 2
66794	palmitate biosynthesis	100	22 of 22
66794	coenzyme A metabolism	100	4 of 4
66794	teichoic acid biosynthesis	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	starch degradation	90	9 of 10
66794	threonine metabolism	90	9 of 10
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	vitamin B1 metabolism	84.62	11 of 13
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glycogen metabolism	80	4 of 5
66794	valine metabolism	77.78	7 of 9
66794	phenylalanine metabolism	76.92	10 of 13
66794	acetate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	gluconeogenesis	75	6 of 8
66794	CMP-KDO biosynthesis	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	isoleucine metabolism	75	6 of 8
66794	pyrimidine metabolism	73.33	33 of 45
66794	photosynthesis	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	purine metabolism	71.28	67 of 94
66794	Entner Doudoroff pathway	70	7 of 10
66794	glutamate and glutamine metabolism	67.86	19 of 28
66794	flavin biosynthesis	66.67	10 of 15
66794	NAD metabolism	66.67	12 of 18
66794	formaldehyde oxidation	66.67	2 of 3
66794	serine metabolism	66.67	6 of 9
66794	d-mannose degradation	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	glycolysis	64.71	11 of 17
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	methionine metabolism	61.54	16 of 26
66794	glycine betaine biosynthesis	60	3 of 5
66794	hydrogen production	60	3 of 5
66794	cellulose degradation	60	3 of 5
66794	tetrahydrofolate metabolism	57.14	8 of 14
66794	citric acid cycle	57.14	8 of 14
66794	cysteine metabolism	55.56	10 of 18
66794	CO2 fixation in Crenarchaeota	55.56	5 of 9
66794	alanine metabolism	55.17	16 of 29
66794	histidine metabolism	55.17	16 of 29
66794	leucine metabolism	53.85	7 of 13
66794	oxidative phosphorylation	52.75	48 of 91
66794	non-pathway related	52.63	20 of 38
66794	adipate degradation	50	1 of 2
66794	butanoate fermentation	50	2 of 4
66794	tryptophan metabolism	50	19 of 38
66794	arginine metabolism	50	12 of 24
66794	myo-inositol biosynthesis	50	5 of 10
66794	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	propionate fermentation	50	5 of 10
66794	urea cycle	46.15	6 of 13
66794	pentose phosphate pathway	45.45	5 of 11
66794	proline metabolism	45.45	5 of 11
66794	lysine metabolism	45.24	19 of 42
66794	tyrosine metabolism	42.86	6 of 14
66794	ubiquinone biosynthesis	42.86	3 of 7
66794	propanol degradation	42.86	3 of 7
66794	isoprenoid biosynthesis	42.31	11 of 26
66794	coenzyme M biosynthesis	40	4 of 10
66794	bacilysin biosynthesis	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	methylglyoxal degradation	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	phosphatidylethanolamine bioynthesis	38.46	5 of 13
66794	sulfate reduction	38.46	5 of 13
66794	ketogluconate metabolism	37.5	3 of 8
66794	metabolism of disaccharids	36.36	4 of 11
66794	vitamin B6 metabolism	36.36	4 of 11
66794	glutathione metabolism	35.71	5 of 14
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
66794	glycolate and glyoxylate degradation	33.33	2 of 6
66794	octane oxidation	33.33	1 of 3
66794	pantothenate biosynthesis	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	1,4-dihydroxy-6-naphthoate biosynthesis	33.33	2 of 6
66794	molybdenum cofactor biosynthesis	33.33	3 of 9
66794	lipid A biosynthesis	33.33	3 of 9
66794	degradation of sugar alcohols	31.25	5 of 16
66794	phenol degradation	30	6 of 20
66794	glycine metabolism	30	3 of 10
66794	lipid metabolism	29.03	9 of 31
66794	d-xylose degradation	27.27	3 of 11
66794	3-phenylpropionate degradation	26.67	4 of 15
66794	polyamine pathway	26.09	6 of 23
66794	biotin biosynthesis	25	1 of 4
66794	degradation of pentoses	25	7 of 28
66794	toluene degradation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	androgen and estrogen metabolism	25	4 of 16
66794	phenylpropanoid biosynthesis	23.08	3 of 13
66794	degradation of hexoses	22.22	4 of 18
66794	nitrate assimilation	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Suidae (Pig,Swine)
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

31355

Sample typeSwine Faeces

Taxonmaps

69479

Global distribution of 16S sequence AY518274 (>99% sequence identity) for Treponema porcinum subclade from Microbeatlas

Aquatic Samples	896
Soil Samples	786
Animal Samples	22269
Plant Samples	293
Total Samples	24244

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	IMG-taxon 2582581326 annotated assembly for Treponema porcinum ATCC BAA-908	scaffold	GCA_900167145	261392.19	2582581326	261392	69.04

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
31355	Treponema porcinum strain 14V28 16S ribosomal RNA gene, partial sequence	AY518274	1426		261392

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: IMG-taxon 2582581326 annotated assembly for Treponema porcinum ATCC BAA-908
NCBI: GCA_900167145

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	86.10	no
125439	motility	BacteriaNetⓘ	no	69.01	no
125439	gram_stain	BacteriaNetⓘ	negative	99.75	no
125439	spore_formation	BacteriaNetⓘ	no	99.94	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Treponema berlinense sp. nov. and Treponema porcinum sp. nov., novel spirochaetes isolated from porcine faeces.	Nordhoff M, Taras D, Macha M, Tedin K, Busse HJ, Wieler LH	Int J Syst Evol Microbiol	10.1099/ijs.0.63388-0	2005

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27668	IJSEM 1675 2005 ( DOI 10.1099/ijs.0.63388-0 , PubMed 16014500 )
#31355	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27668
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Treponema porcinum (ATCC BAA-908, CIP 108245, JCM 12342)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_900167145

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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