Name: Mycoplasma amphoriforme A39
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 134102

Type strain:

Species: Mycoplasma amphoriforme

Strain Designation: A39

Culture col. no.: NCTC 11740, ATCC BAA-992

NCBI tax ID(s): 273136 (species)

Special Collections

Literature strains

Section

Mycoplasma amphoriforme A39 is a facultative anaerobe, mesophilic bacterium that was isolated from human - mouth.

facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Mycoplasmatota*
	Class	*Mollicutes*
	Order	*Mycoplasmatales*
	Family	*Mycoplasmataceae*
	Genus	*Mycoplasma*
	Species	**Mycoplasma amphoriforme**
	Full Scientific Name (LPSN)	Mycoplasma amphoriforme Pitcher et al. 2005

Synonym

"Mycoplasmoides amphoriforme"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Motility	no Confidence in %94.538

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #31307]			optimum	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31307]

Oxygen tolerance

facultative anaerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %94.9

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31307]		glucose ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31307]	Sample type/isolated from	human - mouth
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	#Mouth

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY531655 (>99% sequence identity) for Mycoplasma amphoriforme subclade from Microbeatlas

Aquatic Samples	3
Soil Samples	4
Animal Samples	433
Plant Samples	2
Total Samples	442

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31307]	Mycoplasma amphoriforme strain A39 16S ribosomal RNA gene, partial sequence	AY531655	1511	GenBank ENA	572419 tax ID
[Ref.: #124043]	Mycoplasma amphoriforme strain A39 16S ribosomal RNA gene, partial sequence.	HM235423	1504	GenBank ENA	572419 tax ID	*
[Ref.: #124043]	Mycoplasma amphoriforme A39 16S-23S ribosomal RNA intergenic spacer, partial sequence.	HM235424	367	GenBank ENA	572419 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mycoplasma amphoriforme A39	572419.3	complete	PATRIC	572419 tax ID	*
[Ref.: #66792]	Mycoplasma amphoriforme A39	572419.4	complete	PATRIC	572419 tax ID	*
[Ref.: #66792]	Mycoplasma amphoriforme A39	GCA_000723365	complete	GenBank ENA	572419 tax ID	*

[Ref.: #31307]

GC-content

34 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycoplasma amphoriforme A39 PATRIC: 572419.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	66.637	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	76.792	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	94.9	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	88.449	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.525	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	94.538	no

Availability in culture collections External links

[Ref.: #31307]

Culture collection no.

NCTC 11740, ATCC BAA-992

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mycoplasma amphoriforme sp. nov., isolated from a patient with chronic bronchopneumonia.	Pitcher DG, Windsor D, Windsor H, Bradbury JM, Yavari C, Jensen JS, Ling C, Webster D	Int J Syst Evol Microbiol	10.1099/ijs.0.63269-0	2005	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31307

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27622 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#27622

IJSEM 2589 2005 ( DOI 10.1099/ijs.0.63269-0 , PubMed 16280532 )

* These data were automatically processed and therefore are not curated

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