Name: Pseudoxanthomonas koreensis T7-09
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134100

Type strain:

Species: Pseudoxanthomonas koreensis

Strain Designation: T7-09

Culture col. no.: KCTC 12208, IAM 15116, CCUG 55488, CIP 108711, JCM 21576, NBRC 101160, KCTC 52048

Strain history: CIP <- 2005, IAM <- D.C. Yang, Kyung Hee Univ., Kyunggi, South Korea: strain T7-09

NCBI tax ID(s): 266061 (species)

SI-ID 138033

IAM 15116, KCTC 12208, NBRC 101160, DSM 17802, JCM 21576, CIP 108711, CCUG 55488

Section

Pseudoxanthomonas koreensis T7-09 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from Soil,ginseng field.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Pseudoxanthomonas*
	Species	**Pseudoxanthomonas koreensis**
	Full Scientific Name (LPSN)	Pseudoxanthomonas koreensis Yang et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #31284]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #120484]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.994

[Ref.: #31284]	Cell shape	rod-shaped
[Ref.: #120484]	Cell shape	rod-shaped

[Ref.: #31284]	Motility	no
[Ref.: #120484]	Motility	no

[Ref.: #60606]

Incubation period

1 day

[Ref.: #120484]	Pigment production	yes
[Ref.: #120484]	Pigment name	Pyocyanin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #38294]

Culture medium

MEDIUM 328- for nutrient agar

[Ref.: #38294]

Culture medium growth

[Ref.: #38294]

Culture medium composition

expand / minimize

[Ref.: #120484]

Culture medium

CIP Medium 328

[Ref.: #120484]

Culture medium growth

[Ref.: #120484]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #31284]		growth	30-37 °C
[Ref.: #31284]		optimum	30 °C
[Ref.: #38294]		growth	30 °C
[Ref.: #60606]		growth	30 °C
[Ref.: #67771]		growth	30 °C
[Ref.: #120484]		growth	25-37 °C
[Ref.: #120484]	no	growth	10 °C

[Ref.: #31284]	Temperature range	mesophilic
[Ref.: #38294]	Temperature range	mesophilic
[Ref.: #60606]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic
[Ref.: #120484]	Temperature range	mesophilic
[Ref.: #120484]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31284]	Oxygen tolerance	aerobe
[Ref.: #60606]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe
[Ref.: #120484]	Oxygen tolerance	facultative anaerobe

[Ref.: #31284]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.983

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #120484]		NaCl		growth	0-10	%

[Ref.: #67771]

Observation

quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #120484]	citrate ChEBI	-	carbon source
[Ref.: #120484]	esculin ChEBI	+	hydrolysis
[Ref.: #120484]	nitrate ChEBI	+	reduction
[Ref.: #120484]	nitrate ChEBI	+	respiration
[Ref.: #120484]	nitrite ChEBI	+	reduction

	Metabolite production	Metabolite	Production
[Ref.: #120484]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #120484]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #120484]	amylase	+
[Ref.: #120484]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120484]	caseinase	+	3.4.21.50
[Ref.: #31284]	catalase	+	1.11.1.6
[Ref.: #120484]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #31284]	cytochrome oxidase	+	1.9.3.1
[Ref.: #120484]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #120484]	gelatinase	+
[Ref.: #120484]	lecithinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #120484]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #120484]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120484]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #120484]	oxidase	-
[Ref.: #120484]	protease	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #120484]	tryptophan deaminase	-
[Ref.: #120484]	tween esterase	-
[Ref.: #31284]	urease	+	3.5.1.5
[Ref.: #120484]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #120484]	2883	not determinedn.d.	+	-	+	+	+	-	+	+	-	+	+	-	-	-	-	+	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	+	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120484]	11405	-	+	+	+	-	+	-	-	+	+	+	+	-	+	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #60606]	Sample type/isolated from	Soil,ginseng field
[Ref.: #60606]	Geographic location (country and/or sea, region)	Daejon
[Ref.: #60606]	Country	Republic of Korea
[Ref.: #60606]	Country ISO 3 Code	KOR
[Ref.: #60606]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From compost
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #120484]	Sample type/isolated from	Environment, Soil, ginseng field
[Ref.: #120484]	Geographic location (country and/or sea, region)	Daejeon
[Ref.: #120484]	Country	Republic of Korea
[Ref.: #120484]	Country ISO 3 Code	KOR
[Ref.: #120484]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #120484]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31284]	Pseudoxanthomonas koreensis strain T7-09 16S ribosomal RNA gene, partial sequence	AY550263	1419	GenBank	266061 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudoxanthomonas koreensis KCTC 12208	GCA_010093225	contig	GenBank	266061 tax ID	*
[Ref.: #66792]	Pseudoxanthomonas koreensis strain KCTC 12208	266061.3	wgs	PATRIC	266061 tax ID	*

[Ref.: #31284]

GC-content

69.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudoxanthomonas koreensis strain KCTC 12208 PATRIC: 266061.3
[Ref.: #69481]	spore-forming	no	89	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudoxanthomonas koreensis strain KCTC 12208 PATRIC: 266061.3
[Ref.: #69480]	motile	no	85.455	yes
[Ref.: #69480]	gram-positive	no	98.39	yes
[Ref.: #69480]	anaerobic	no	99.42	yes
[Ref.: #69480]	halophile	no	95.405	no
[Ref.: #69480]	spore-forming	no	96.712	yes
[Ref.: #69480]	glucose-util	yes	89.798	no
[Ref.: #69480]	flagellated	no	98.087	yes
[Ref.: #69480]	thermophile	no	96.068	yes
[Ref.: #69480]	aerobic	yes	89.55	no
[Ref.: #69480]	glucose-ferment	no	88.559	no

Availability in culture collections External links

[Ref.: #31284]

Culture collection no.

KCTC 12208, IAM 15116, CCUG 55488, CIP 108711, JCM 21576, NBRC 101160, KCTC 52048

[Ref.: #91707]

SI-ID 138033

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudoxanthomonas humi sp. nov., a bacterium isolated from rhizospheric soil of Fraxinus chinensis in Gyeonggi Province, South Korea.	Akter S, Jo H, Du J, Won K, Yin CS, Kook M, Yu H, Choi HS, Kim MK, Yi TH	Arch Microbiol	10.1007/s00203-015-1157-5	2015	*
Phylogeny	Pseudoxanthomonas koreensis sp. nov. and Pseudoxanthomonas daejeonensis sp. nov.	Yang DC, Im WT, Kim MK, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.63210-0	2005	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31284

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27603 (see below)

#38294 ; Curators of the CIP;
#60606 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55488

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91707

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID138033.1 )

#120484 Collection of Institut Pasteur ; Curators of the CIP; CIP 108711

#27603

IJSEM 787 2005 ( DOI 10.1099/ijs.0.63210-0 , PubMed 15774663 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Pseudoxanthomonas koreensis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Pseudoxanthomonas koreensis strain KCTC 12208

Pseudoxanthomonas koreensis strain KCTC 12208

Change proposal

Change proposal