Name: Pseudonocardia bannensis DSM 45300
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13410

Type strain:

Species: Pseudonocardia bannensis

Culture col. no.: DSM 45300, CCTCC AA 208077, YIM 63101

Strain history: <- S.-K. Tang, Yunnan Univ., Kunming; YIM 63101 <- G.-Z. Zhao

NCBI tax ID(s): 630973 (species)

SI-ID 406032

DSM 45300

Section

Pseudonocardia bannensis DSM 45300 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from surface-sterilized roots of Artemisia annua.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Pseudonocardia*
	Species	**Pseudonocardia bannensis**
	Full Scientific Name (LPSN)	Pseudonocardia bannensis corrig. Zhao et al. 2012

Synonym

Pseudonocardia bannaensis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Multimedia content

[Ref.: #16156]

Caption:

Medium 65 28°C

[Ref.: #16156]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #16156]

Culture medium composition

expand / minimize

[Ref.: #16156]

Culture medium

ISP2 MEDIUM (DSMZ Medium 987)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #16156]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16156]			growth	28 °C

[Ref.: #16156]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

yes Confidence in %92

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16156]	Sample type/isolated from	surface-sterilized roots of Artemisia annua
[Ref.: #16156]	Host species	Artemisia annua
[Ref.: #16156]	Geographic location (country and/or sea, region)	Yunnan province
[Ref.: #16156]	Country	China
[Ref.: #16156]	Country ISO 3 Code	CHN
[Ref.: #16156]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)
#Host Body-Site	#Plant	#Sterilized plant part

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ817375 (>99% sequence identity) for Pseudonocardia bannensis from Microbeatlas

Aquatic Samples	11
Soil Samples	147
Animal Samples	12
Plant Samples	12
Total Samples	182

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16156]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16156]	Pseudonocardia bannensis strain YIM 63101 16S ribosomal RNA gene, partial sequence	FJ817375	1422	ENA	630973 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudonocardia bannensis DSM 45300	GCA_012911875	contig	GenBank	630973 tax ID	*
[Ref.: #66792]	Pseudonocardia bannensis strain DSM 45300	630973.3	wgs	PATRIC	630973 tax ID	*

[Ref.: #16156]

GC-content

69.4 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudonocardia bannensis strain DSM 45300 PATRIC: 630973.3
[Ref.: #69481]	spore-forming	yes	92	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudonocardia bannensis strain DSM 45300 PATRIC: 630973.3
[Ref.: #69480]	gram-positive	yes	87.649	no
[Ref.: #69480]	anaerobic	no	99.005	no
[Ref.: #69480]	halophile	no	90.973	no
[Ref.: #69480]	spore-forming	yes	66.093	no
[Ref.: #69480]	glucose-util	yes	87.179	no
[Ref.: #69480]	thermophile	no	97.863	yes
[Ref.: #69480]	flagellated	no	98.621	no
[Ref.: #69480]	aerobic	yes	93.762	no
[Ref.: #69480]	motile	no	93.733	no
[Ref.: #69480]	glucose-ferment	no	93.167	no

Availability in culture collections External links

[Ref.: #16156]

Culture collection no.

DSM 45300, CCTCC AA 208077, YIM 63101

[Ref.: #82607]

SI-ID 406032

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudonocardia acidicola sp. nov., a novel actinomycete isolated from peat swamp forest soil.	Klaysubun C, Lipun K, Duangmal K	Int J Syst Evol Microbiol	10.1099/ijsem.0.004459	2020	*
Phylogeny	Pseudonocardia nigra sp. nov., isolated from Atacama Desert rock.	Trujillo ME, Idris H, Riesco R, Nouioui I, Igual JM, Bull AT, Goodfellow M	Int J Syst Evol Microbiol	10.1099/ijsem.0.002063	2017	*
Phylogeny	Pseudonocardia bannaensis sp. nov., a novel actinomycete isolated from the surface-sterilized roots of Artemisia annua L.	Zhao GZ, Li J, Zhu WY, Li XP, Tian SZ, Zhao LX, Xu LH, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-011-9562-5	2011	*

References

#16156

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45300

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#82607

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406032.1 )

* These data were automatically processed and therefore are not curated

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Pseudonocardia bannensis strain DSM 45300

Pseudonocardia bannensis strain DSM 45300

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