Name: Nocardioides aestuarii JC2056
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 134096

Type strain:

Species: Nocardioides aestuarii

Strain Designation: JC2056

Culture col. no.: IMSNU 14029, KCTC 9921, JCM 12125

Strain history: <- JS Chun, Seoul Natl. Univ.

NCBI tax ID(s): 252231 (species)

SI-ID 134458

JCM 12125, KCTC 9921

Special Collections

Section

Nocardioides aestuarii JC2056 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from estuarine sediment.

Gram-positive
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Nocardioidaceae*
	Genus	*Nocardioides*
	Species	**Nocardioides aestuarii**
	Full Scientific Name (LPSN)	Nocardioides aestuarii Yi and Chun 2004

Information on morphological and physiological properties Morphology

[Ref.: #31276]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #31276]	Cell length	1.5 µm

[Ref.: #31276]	Cell width	0.35 µm

[Ref.: #31276]	Cell shape	rod-shaped

[Ref.: #31276]	Motility	no

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #31276]	growth	20-35 °C
[Ref.: #31276]	optimum	30 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #67771]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #31276]			optimum	7
[Ref.: #31276]			growth	06-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31276]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #31276]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31276]		NaCl		growth	0-8	%
[Ref.: #31276]		NaCl		optimum	1	%

[Ref.: #67770]

Observation

quinones: MK-8(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31276]	cellobiose ChEBI	+	carbon source
[Ref.: #31276]	citrate ChEBI	+	carbon source
[Ref.: #31276]	fructose ChEBI	+	carbon source
[Ref.: #31276]	galactose ChEBI	+	carbon source
[Ref.: #31276]	glucose ChEBI	+	carbon source
[Ref.: #31276]	glycerol ChEBI	+	carbon source
[Ref.: #31276]	lactose ChEBI	+	carbon source
[Ref.: #31276]	mannitol ChEBI	+	carbon source
[Ref.: #31276]	mannose ChEBI	+	carbon source
[Ref.: #31276]	raffinose ChEBI	+	carbon source
[Ref.: #31276]	ribose ChEBI	+	carbon source
[Ref.: #31276]	salicin ChEBI	+	carbon source
[Ref.: #31276]	tween 80 ChEBI	+	carbon source
[Ref.: #31276]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #31276]	acid phosphatase	+	3.1.3.2
[Ref.: #31276]	alkaline phosphatase	+	3.1.3.1
[Ref.: #31276]	catalase	+	1.11.1.6
[Ref.: #31276]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31276]	Sample type/isolated from	estuarine sediment

[Ref.: #67770]	Sample type/isolated from	Tidal flat sediment
[Ref.: #67770]	Geographic location (country and/or sea, region)	Ganghwa Island
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From a sediment sample of getbol, the tidal flat of Korea
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Estuary
#Environmental	#Aquatic	#Sediment
#Environmental	#Aquatic	#Brackish

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31276]	Nocardioides aestuarii strain JC2056 16S ribosomal RNA gene, partial sequence	AY423719	1445	GenBank ENA	252231 tax ID

[Ref.: #31276]	GC-content	70 mol%
[Ref.: #67770]	GC-content	70 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #31276]

Culture collection no.

IMSNU 14029, KCTC 9921, JCM 12125

[Ref.: #91704]

SI-ID 134458

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardioides euryhalodurans sp. nov., Nocardioides seonyuensis sp. nov. and Nocardioides eburneiflavus sp. nov., isolated from soil.	Roh SG, Lee C, Kim MK, Kang HJ, Kim YS, Kim MJ, Malik A, Kim SB	Int J Syst Evol Microbiol	10.1099/ijsem.0.004095	2020	*
Phylogeny	Nocardioides kandeliae sp. nov., an endophytic actinomycete isolated from leaves of Kandelia candel.	Liu J, Li F, Gao CH, Han Y, Hao H, Yi XX, Huang RM	Int J Syst Evol Microbiol	10.1099/ijsem.0.002218	2017	*
Phylogeny	Nocardioides tritolerans sp. nov., Isolated from soil in Bigeum Island, Korea.	Dastager SG, Lee JC, Ju YJ, Park DJ, Kim CJ	J Microbiol Biotechnol	7475	2008	*
Phylogeny	Nocardioides aestuarii sp. nov., isolated from tidal flat sediment.	Yi H, Chun J	Int J Syst Evol Microbiol	10.1099/ijs.0.63192-0	2004	*
Phylogeny	Nocardioides paucivorans sp. nov. isolated from soil.	Ahn JH, Lim JM, Kim SJ, Song J, Kwon SW, Weon HY	J Microbiol	10.1007/s12275-014-4587-x	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31276

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27596 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#91704

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID134458.1 )

#27596

IJSEM 2151 2004 ( DOI 10.1099/ijs.0.63192-0 , PubMed 15545450 )

* These data were automatically processed and therefore are not curated

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