Nocardioides aestuarii (IMSNU 14029, KCTC 9921, JCM 12125)

Name: Nocardioides aestuarii (IMSNU 14029, KCTC 9921, JCM 12125)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134096

Type strain

Strain Designation JC2056

Culture col. no. IMSNU 14029 KCTC 9921 JCM 12125 JC2056

NCBI tax ID(s) 252231

Special Collections JCM KCTC Literature strains

Links

Nocardioides aestuarii JC2056 is an aerobe, Gram-positive, rod-shaped prokaryote that was isolated from estuarine sediment.

Gram-positive rod-shaped aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 134458

JCM 12125,KCTC 9921

@ref 20215

Last LPSN update 2025-12-16 10:01:58

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Propionibacteriales

Family Nocardioidaceae

Genus Nocardioides

Species Nocardioides aestuarii

Full scientific name Nocardioides aestuarii Yi and Chun 2004

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
31276	positive	1.5 µm	0.35 µm	rod-shaped
67771	positive

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
31276	positive	growth	20-35
31276	positive	optimum	30	mesophilic
67770	positive	growth	30	mesophilic
67771	positive	growth	28	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
31276	positive	optimum	7
31276	positive	growth	06-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
31276	aerobe
67771	aerobe

Spore formation

31276

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31276	NaCl	positive	growth	0-8 %
31276	NaCl	positive	optimum	1 %

Observation

67770

Observationquinones: MK-8(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31276	17057 ChEBI	cellobiose	+	carbon source
31276	16947 ChEBI	citrate	+	carbon source
31276	28757 ChEBI	fructose	+	carbon source
31276	28260 ChEBI	galactose	+	carbon source
31276	17234 ChEBI	glucose	+	carbon source
31276	17754 ChEBI	glycerol	+	carbon source
31276	17716 ChEBI	lactose	+	carbon source
31276	29864 ChEBI	mannitol	+	carbon source
31276	37684 ChEBI	mannose	+	carbon source
31276	16634 ChEBI	raffinose	+	carbon source
31276	33942 ChEBI	ribose	+	carbon source
31276	17814 ChEBI	salicin	+	carbon source
31276	53426 ChEBI	tween 80	+	carbon source
31276	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
31276	acid phosphatase	+	3.1.3.2
31276	alkaline phosphatase	+	3.1.3.1
31276	catalase	+	1.11.1.6
31276	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Estuary
#Environmental	#Aquatic	#Sediment
#Environmental	#Aquatic	#Brackish

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
31276	estuarine sediment
67770	Tidal flat sediment	Ganghwa Island	Republic of Korea	KOR	Asia
67771	From a sediment sample of getbol, the tidal flat of Korea		Republic of Korea	KOR	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3952724v1 assembly for Nocardioides aestuarii JCM 12125	scaffold	GCA_039527245	252231	71.89
124043	ASM4268178v1 assembly for Nocardioides aestuarii JCM 12125	scaffold	GCA_042681785	252231	71.29

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
31276	Nocardioides aestuarii strain JC2056 16S ribosomal RNA gene, partial sequence	AY423719	1445		252231

GC content

@ref	GC-content (mol%)	Method
31276	70
67770	70	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardioides euryhalodurans sp. nov., Nocardioides seonyuensis sp. nov. and Nocardioides eburneiflavus sp. nov., isolated from soil.	Roh SG, Lee C, Kim MK, Kang HJ, Kim YS, Kim MJ, Malik A, Kim SB	Int J Syst Evol Microbiol	10.1099/ijsem.0.004095	2020
Phylogeny	Nocardioides kandeliae sp. nov., an endophytic actinomycete isolated from leaves of Kandelia candel.	Liu J, Li F, Gao CH, Han Y, Hao H, Yi XX, Huang RM	Int J Syst Evol Microbiol	10.1099/ijsem.0.002218	2017
Phylogeny	Nocardioides tritolerans sp. nov., Isolated from soil in Bigeum Island, Korea.	Dastager SG, Lee JC, Ju YJ, Park DJ, Kim CJ	J Microbiol Biotechnol	7475	2008
Phylogeny	Nocardioides aestuarii sp. nov., isolated from tidal flat sediment.	Yi H, Chun J	Int J Syst Evol Microbiol	10.1099/ijs.0.63192-0	2004
Phylogeny	Nocardioides paucivorans sp. nov. isolated from soil.	Ahn JH, Lim JM, Kim SJ, Song J, Kwon SW, Weon HY	J Microbiol	10.1007/s12275-014-4587-x	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27596	IJSEM 2151 2004 ( DOI 10.1099/ijs.0.63192-0 , PubMed 15545450 )
#31276	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27596
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nocardioides aestuarii (IMSNU 14029, KCTC 9921, JCM 12125)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_039527245

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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