Name: Haloferula harenae YM23-227
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134079

Type strain:

Species: Haloferula harenae

Strain Designation: YM23-227

Culture col. no.: MBIC 08299, KCTC 22198

Strain history: <- JW Yoon, Tokoy Univ., Japan <- Y Matsuo, MBI

NCBI tax ID(s): 490092 (species)

Section

Haloferula harenae YM23-227 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from marine sediment.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Verrucomicrobiota*
	Class	*Verrucomicrobiia*
	Order	*Verrucomicrobiales*
	Family	*Verrucomicrobiaceae*
	Genus	*Haloferula*
	Species	**Haloferula harenae**
	Full Scientific Name (LPSN)	Haloferula harenae Yoon et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #31193]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #31193]	Cell length	1.5-2 µm

[Ref.: #31193]	Cell width	0.8-1 µm

[Ref.: #31193]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #31193]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #31193]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #31193]	growth	20-37 °C
[Ref.: #31193]	optimum	25-30 °C
[Ref.: #67771]	growth	25-30 °C

[Ref.: #31193]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31193]			optimum	06-09
[Ref.: #31193]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31193]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #31193]	Ability of spore formation	no
[Ref.: #67771]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31193]		NaCl		growth	0-5	%
[Ref.: #31193]		NaCl		optimum	0-5	%

[Ref.: #31193]	Observation	aggregates in chains
[Ref.: #67771]	Observation	quinones: MK-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31193]	arabinose ChEBI	+	carbon source
[Ref.: #31193]	cellobiose ChEBI	+	carbon source
[Ref.: #31193]	dextrin ChEBI	+	carbon source
[Ref.: #31193]	fructose ChEBI	+	carbon source
[Ref.: #31193]	galactose ChEBI	+	carbon source
[Ref.: #31193]	glucose ChEBI	+	carbon source
[Ref.: #31193]	glycerol ChEBI	+	carbon source
[Ref.: #31193]	lactose ChEBI	+	carbon source
[Ref.: #31193]	maltose ChEBI	+	carbon source
[Ref.: #31193]	mannose ChEBI	+	carbon source
[Ref.: #31193]	melibiose ChEBI	+	carbon source
[Ref.: #31193]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #31193]	raffinose ChEBI	+	carbon source
[Ref.: #31193]	succinate ChEBI	+	carbon source
[Ref.: #31193]	sucrose ChEBI	+	carbon source
[Ref.: #31193]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #31193]	acid phosphatase	+	3.1.3.2
[Ref.: #31193]	alkaline phosphatase	+	3.1.3.1
[Ref.: #31193]	catalase	+	1.11.1.6
[Ref.: #31193]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31193]	Sample type/isolated from	marine sediment

[Ref.: #67771]	Sample type/isolated from	From marine sediment
[Ref.: #67771]	Geographic location (country and/or sea, region)	Milky Way marine lake(Â°15â€²49.2â€² N13Â°24â€²55.7â€²â€²E)
[Ref.: #67771]	Country	Palau
[Ref.: #67771]	Country ISO 3 Code	PLW
[Ref.: #67771]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB372852 (>99% sequence identity) for Haloferula harenae subclade from Microbeatlas

Aquatic Samples	515
Soil Samples	11
Animal Samples	65
Plant Samples	2
Total Samples	593

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31193]	Haloferula harenae gene for 16S rRNA, partial sequence, strain: YM23-227	AB372852	1440	GenBank	490092 tax ID

[Ref.: #31193]

GC-content

63.8 mol%

Availability in culture collections External links

[Ref.: #31193]

Culture collection no.

MBIC 08299, KCTC 22198

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Haloferula chungangensis sp. nov., isolated from marine sediment.	Kang H, Traiwan J, Weerawongwiwat V, Jung MY, Jeong JH, Myung SC, Lee KC, Lee JS, Kim W	Int J Syst Evol Microbiol	10.1099/ijs.0.039016-0	2012	*
Phylogeny	Haloferula rosea gen. nov., sp. nov., Haloferula harenae sp. nov., Haloferula phyci sp. nov., Haloferula helveola sp. nov. and Haloferula sargassicola sp. nov., five marine representatives of the family Verrucomicrobiaceae within the phylum 'Verrucomicrobia'.	Yoon J, Matsuo Y, Katsuta A, Jang JH, Matsuda S, Adachi K, Kasai H, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/000711-0	2008	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31193

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27520 (see below)

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#27520

IJSEM 2491 2008 ( DOI 10.1099/ijs.0.2008/000711-0 , PubMed 18984682 )

* These data were automatically processed and therefore are not curated

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