Haloferula harenae (MBIC 08299, KCTC 22198, YM23-227)

Name: Haloferula harenae (MBIC 08299, KCTC 22198, YM23-227)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134079

Type strain

Strain Designation YM23-227

Culture col. no. MBIC 08299 KCTC 22198 YM23-227

NCBI tax ID(s) 490092

Special Collections KCTC Literature strains

Links

Haloferula harenae YM23-227 is an aerobe, Gram-negative, rod-shaped prokaryote that was isolated from marine sediment.

Gram-negative rod-shaped aerobe 16S sequence

Name and taxonomic classification

SI-ID 26209

KCTC 22198

@ref 20215

Last LPSN update 2025-12-16 10:01:58

Domain Pseudomonadati

Phylum Verrucomicrobiota

Class Verrucomicrobiia

Order Verrucomicrobiales

Family Verrucomicrobiaceae

Genus Haloferula

Species Haloferula harenae

Full scientific name Haloferula harenae Yoon et al. 2008

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
31193	negative	1.5-2 µm	0.8-1 µm	rod-shaped
67771				rod-shaped
67771	negative

Pigmentation

31193

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
31193	positive	growth	20-37
31193	positive	optimum	25-30	mesophilic
67771	positive	growth	25-30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
31193	positive	optimum	06-09
31193	positive	growth	06-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
31193	aerobe
67771	aerobe

Spore formation

@ref	Spore formation
31193
67771

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31193	NaCl	positive	growth	0-5 %
31193	NaCl	positive	optimum	0-5 %

Observation

@ref	Observation
31193	aggregates in chains
67771	quinones: MK-9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31193	22599 ChEBI	arabinose	+	carbon source
31193	17057 ChEBI	cellobiose	+	carbon source
31193	23652 ChEBI	dextrin	+	carbon source
31193	28757 ChEBI	fructose	+	carbon source
31193	28260 ChEBI	galactose	+	carbon source
31193	17234 ChEBI	glucose	+	carbon source
31193	17754 ChEBI	glycerol	+	carbon source
31193	17716 ChEBI	lactose	+	carbon source
31193	17306 ChEBI	maltose	+	carbon source
31193	37684 ChEBI	mannose	+	carbon source
31193	28053 ChEBI	melibiose	+	carbon source
31193	506227 ChEBI	N-acetylglucosamine	+	carbon source
31193	16634 ChEBI	raffinose	+	carbon source
31193	30031 ChEBI	succinate	+	carbon source
31193	17992 ChEBI	sucrose	+	carbon source
31193	27082 ChEBI	trehalose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
31193	acid phosphatase	+	3.1.3.2
31193	alkaline phosphatase	+	3.1.3.1
31193	catalase	+	1.11.1.6
31193	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
31193	marine sediment
67771	From marine sediment	Milky Way marine lake(Â°15â€²49.2â€² N13Â°24â€²55.7â€²â€²E)	Palau	PLW	Australia and Oceania

Taxonmaps

69479

Global distribution of 16S sequence AB372852 (>99% sequence identity) for Haloferula harenae subclade from Microbeatlas

Aquatic Samples	515
Soil Samples	11
Animal Samples	65
Plant Samples	2
Total Samples	593

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
31193	Haloferula harenae gene for 16S rRNA, partial sequence, strain: YM23-227	AB372852	1440		490092

GC content

31193

GC-content (mol%)63.8

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Haloferula chungangensis sp. nov., isolated from marine sediment.	Kang H, Traiwan J, Weerawongwiwat V, Jung MY, Jeong JH, Myung SC, Lee KC, Lee JS, Kim W	Int J Syst Evol Microbiol	10.1099/ijs.0.039016-0	2012
Phylogeny	Haloferula rosea gen. nov., sp. nov., Haloferula harenae sp. nov., Haloferula phyci sp. nov., Haloferula helveola sp. nov. and Haloferula sargassicola sp. nov., five marine representatives of the family Verrucomicrobiaceae within the phylum 'Verrucomicrobia'.	Yoon J, Matsuo Y, Katsuta A, Jang JH, Matsuda S, Adachi K, Kasai H, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/000711-0	2008

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#31193	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27520 (see below)
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Haloferula harenae (MBIC 08299, KCTC 22198, YM23-227)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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