Name: Lacibacterium aquatile LTC-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134071

Type strain:

Species: Lacibacterium aquatile

Strain Designation: LTC-2

Culture col. no.: BCRC 80445, LMG 26999, KCTC 32017

Strain history: <- W-M Chen, Nat Kaohsiung Marine Univ., Taiwan

NCBI tax ID(s): 1168082 (species)

SI-ID 379941

LMG 26999, BCRC 80445, KCTC 32017

Section

Lacibacterium aquatile LTC-2 is a facultative aerobe, Gram-negative, motile bacterium that was isolated from freshwater .

Gram-negative
motile
rod-shaped
facultative aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Azospirillaceae*
	Genus	*Lacibacterium*
	Species	**Lacibacterium aquatile**
	Full Scientific Name (LPSN)	Lacibacterium aquatile Sheu et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #31172]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #31172]	Cell length	3.15 µm

[Ref.: #31172]	Cell width	0.6 µm

[Ref.: #31172]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	curved-shaped

[Ref.: #31172]	Motility	yes
[Ref.: #67771]	Motility	yes

[Ref.: #67771]	Flagellum arrangement	monotrichous, polar

[Ref.: #31172]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #31172]	growth	10-37 °C
[Ref.: #31172]	optimum	25 °C
[Ref.: #67771]	growth	25 °C

[Ref.: #31172]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31172]			optimum	7.5
[Ref.: #31172]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31172]	Oxygen tolerance	facultative aerobe
[Ref.: #67771]	Oxygen tolerance	facultative anaerobe

[Ref.: #31172]	Ability of spore formation	no
[Ref.: #67771]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31172]		NaCl		growth	0-1.0	%

[Ref.: #31172]	Observation	aggregates in clumps
[Ref.: #67771]	Observation	quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31172]	acetate ChEBI	+	carbon source
[Ref.: #31172]	alanine ChEBI	+	carbon source
[Ref.: #31172]	asparagine ChEBI	+	carbon source
[Ref.: #31172]	aspartate ChEBI	+	carbon source
[Ref.: #31172]	cellobiose ChEBI	+	carbon source
[Ref.: #31172]	dextrin ChEBI	+	carbon source
[Ref.: #31172]	fructose ChEBI	+	carbon source
[Ref.: #31172]	fucose ChEBI	+	carbon source
[Ref.: #31172]	galactose ChEBI	+	carbon source
[Ref.: #31172]	glucose ChEBI	+	carbon source
[Ref.: #31172]	glutamate ChEBI	+	carbon source
[Ref.: #31172]	glycogen ChEBI	+	carbon source
[Ref.: #31172]	histidine ChEBI	+	carbon source
[Ref.: #31172]	inosine ChEBI	+	carbon source
[Ref.: #31172]	L-alaninamide ChEBI	+	carbon source
[Ref.: #31172]	L-arabitol ChEBI	+	carbon source
[Ref.: #31172]	lactate ChEBI	+	carbon source
[Ref.: #31172]	mannitol ChEBI	+	carbon source
[Ref.: #31172]	mannose ChEBI	+	carbon source
[Ref.: #31172]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #31172]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #31172]	ornithine ChEBI	+	carbon source
[Ref.: #31172]	proline ChEBI	+	carbon source
[Ref.: #31172]	rhamnose ChEBI	+	carbon source
[Ref.: #31172]	sorbitol ChEBI	+	carbon source
[Ref.: #31172]	thymidine ChEBI	+	carbon source
[Ref.: #31172]	tween 40 ChEBI	+	carbon source
[Ref.: #31172]	tween 80 ChEBI	+	carbon source
[Ref.: #31172]	uridine ChEBI	+	carbon source
[Ref.: #31172]	urocanic acid ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #31172]	acid phosphatase	+	3.1.3.2
[Ref.: #31172]	alkaline phosphatase	+	3.1.3.1
[Ref.: #31172]	catalase	+	1.11.1.6
[Ref.: #31172]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31172]	Sample type/isolated from	freshwater (river, lake, pond)

[Ref.: #67771]	Sample type/isolated from	From freshwater
[Ref.: #67771]	Geographic location (country and/or sea, region)	Lotus Lake, Kaoshiung County
[Ref.: #67771]	Country	Taiwan
[Ref.: #67771]	Country ISO 3 Code	TWN
[Ref.: #67771]	Continent	Asia
[Ref.: #67771]	Geographic location	22.6847°/120.2970°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Pond (small)
#Environmental	#Aquatic	#River (Creek)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HE795994 (>99% sequence identity) for Lacibacterium aquatile subclade from Microbeatlas

Aquatic Samples	1281
Soil Samples	1036
Animal Samples	250
Plant Samples	491
Total Samples	3058

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31172]	Lacibacterium aquatile partial 16S rRNA gene, type strain LTC-2T	HE795994	1401	GenBank	1168082 tax ID

[Ref.: #31172]

GC-content

58.5 mol%

Availability in culture collections External links

[Ref.: #31172]

Culture collection no.

BCRC 80445, LMG 26999, KCTC 32017

[Ref.: #91693]

SI-ID 379941

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lacibacterium aquatile gen. nov., sp. nov., a new member of the family Rhodospirillaceae isolated from a freshwater lake.	Sheu SY, Chen YL, Young CC, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.055145-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31172

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27500 (see below)

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91693

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID379941.1 )

#27500

IJSEM 4797 2013 ( DOI 10.1099/ijs.0.055145-0 , PubMed 24002472 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Lacibacterium aquatile in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF