Nocardioides conyzicola (KCTC 29121, JCM 18531, HWE 2-02)

Name: Nocardioides conyzicola (KCTC 29121, JCM 18531, HWE 2-02)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134068

Type strain

Strain Designation BP781702

Culture col. no. KCTC 29121 JCM 18531 HWE 2-02 BP781702

NCBI tax ID(s) 1651781

Special Collections JCM KCTC Literature strains

History JCM <-- S. B. Kim HWE 2-02. KCTC <- SB Kim, Chungnam Natl. Univ.

Links

Nocardioides conyzicola BP781702 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from plant associated.

Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 26936

KCTC 29121,JCM 18531

@ref 20215

Last LPSN update 2026-05-29 08:38:14

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Propionibacteriales

Family Nocardioidaceae

Genus Nocardioides

Species Nocardioides conyzicola

Full scientific name Nocardioides conyzicola Han et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
31166	positive	0.45 µm	0.41 µm	rod-shaped
125439	positive					98.845

Pigmentation

31166

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
31166	positive	optimum	27.5
67770	positive	growth	28
67771	positive	growth	30

Culture pH

@ref	Ability	Type	PH
31166	positive	optimum	6

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31166	aerobe
67771	aerobe
125439	obligate aerobe	98.857

Spore formation

31166

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31166	NaCl	positive	growth	0-1.0 %

Observation

@ref	Observation
31166	aggregates in clumps
67770	quinones: MK-8(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31166	17057 ChEBI	cellobiose	+	carbon source
31166	33984 ChEBI	fucose	+	carbon source
31166	18403 ChEBI	L-arabitol	+	carbon source
31166	17716 ChEBI	lactose	+	carbon source
31166	29864 ChEBI	mannitol	+	carbon source
31166	17632 ChEBI	nitrate	+	reduction
31166	26546 ChEBI	rhamnose	+	carbon source
31166	17814 ChEBI	salicin	+	carbon source
31166	30911 ChEBI	sorbitol	+	carbon source

Enzymes

@ref	Value	Activity	Ec
31166	catalase	+	1.11.1.6
31166	cytochrome oxidase	+	1.9.3.1
31166	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Plants

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
31166	plant associated
67770	Surface-sterilized roots of horse-weed (Conyza canadensis)	Conyza canadensis	Daejeon area	Republic of Korea	KOR	Asia
67771	From surface-sterilized roots of horse-weed (Conyza canadensis)			Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence KC878445 (>99% sequence identity) for Nocardioides conyzicola from Microbeatlas

Aquatic Samples	7
Soil Samples	19
Animal Samples	10
Plant Samples	4
Total Samples	40

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3954382v1 assembly for Nocardioides conyzicola JCM 18531	scaffold	GCA_039543825	1651781	76.18

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
31166	Nocardioides conyzicola strain HWE 2-02 16S ribosomal RNA gene, partial sequence	KC878445	1422		1651781

GC content

@ref	GC-content (mol%)	Method
31166	68.47
67770	68.47	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3954382v1 assembly for Nocardioides conyzicola JCM 18531
NCBI: GCA_039543825

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.86	no
125439	motility	BacteriaNetⓘ	no	81.87	no
125439	gram_stain	BacteriaNetⓘ	positive	98.85	no
125439	spore_formation	BacteriaNetⓘ	no	85.89	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardioides agri sp. nov., isolated from garden soil.	Huq MA, Nam K, Rahman MS, Rahman MM, Parvez MAK, Kang KK, Akter S.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006407	2024
Phylogeny	Nocardioides endophyticus sp. nov. and Nocardioides conyzicola sp. nov., isolated from herbaceous plant roots.	Han JH, Kim TS, Joung Y, Kim MN, Shin KS, Bae T, Kim SB	Int J Syst Evol Microbiol	10.1099/ijs.0.054619-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27494	IJSEM 4730 2013 ( DOI 10.1099/ijs.0.054619-0 , PubMed 23990649 )
#31166	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27494
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nocardioides conyzicola (KCTC 29121, JCM 18531, HWE 2-02)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_039543825

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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