Name: Chryseobacterium bernardetii CDCG229
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134062

Type strain:

Species: Chryseobacterium bernardetii

Strain Designation: CDCG229

Culture col. no.: CCUG 60564, NCTC 13530

NCBI tax ID(s): 1241978 (species)

SI-ID 411771

CCUG 60564

Section

Chryseobacterium bernardetii CDCG229 is an aerobe, Gram-negative bacterium that was isolated from human - mouth.

Gram-negative
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Chryseobacterium*
	Species	**Chryseobacterium bernardetii**
	Full Scientific Name (LPSN)	Chryseobacterium bernardetii Holmes et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #31161]	Gram stain	negative

[Ref.: #31161]	Motility	no

[Ref.: #31161]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #31161]			growth	18-37 °C
[Ref.: #62359]			growth	37 °C

[Ref.: #62359]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #62359]

Oxygen tolerance

aerobe

[Ref.: #31161]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31161]	arabinose ChEBI	+	carbon source
[Ref.: #31161]	esculin ChEBI	+	hydrolysis
[Ref.: #31161]	fructose ChEBI	+	carbon source
[Ref.: #31161]	glucose ChEBI	+	carbon source
[Ref.: #31161]	glycerol ChEBI	+	carbon source
[Ref.: #31161]	maltose ChEBI	+	carbon source
[Ref.: #31161]	sucrose ChEBI	+	carbon source
[Ref.: #31161]	trehalose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #31161]	catalase	+	1.11.1.6
[Ref.: #31161]	cytochrome oxidase	+	1.9.3.1
[Ref.: #31161]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31161]	Sample type/isolated from	human - mouth

[Ref.: #62359]	Sample type/isolated from	Human,sputum
[Ref.: #62359]	Geographic location (country and/or sea, region)	England,Doncaster
[Ref.: #62359]	Country	United Kingdom
[Ref.: #62359]	Country ISO 3 Code	GBR
[Ref.: #62359]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	#Mouth

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31161]	Chryseobacterium bernardetii strain G229 16S ribosomal RNA gene, partial sequence	JX100816	1439	GenBank	1241978 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chryseobacterium sp. L7	2797638.3	wgs	PATRIC	2797638 tax ID	*

[Ref.: #31161]

GC-content

37 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chryseobacterium sp. L7 PATRIC: 2797638.3
[Ref.: #69480]	motile	no	88.562	no
[Ref.: #69480]	gram-positive	no	97.436	yes
[Ref.: #69480]	anaerobic	no	99.58	yes
[Ref.: #69480]	halophile	no	95.702	no
[Ref.: #69480]	spore-forming	no	93.172	no
[Ref.: #69480]	glucose-util	yes	86.131	yes
[Ref.: #69480]	flagellated	no	95.226	yes
[Ref.: #69480]	aerobic	yes	92.991	yes
[Ref.: #69480]	thermophile	no	99.841	yes
[Ref.: #69480]	glucose-ferment	no	93.87	no

Availability in culture collections External links

[Ref.: #31161]

Culture collection no.

CCUG 60564, NCTC 13530

[Ref.: #91689]

SI-ID 411771

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chryseobacterium artocarpi sp. nov., isolated from the rhizosphere soil of Artocarpus integer.	Venil CK, Nordin N, Zakaria ZA, Ahmad WA	Int J Syst Evol Microbiol	10.1099/ijs.0.063594-0	2014	*
Phylogeny	DNA-DNA hybridization study of strains of Chryseobacterium, Elizabethkingia and Empedobacter and of other usually indole-producing non-fermenters of CDC groups IIc, IIe, IIh and IIi, mostly from human clinical sources, and proposals of Chryseobacterium bernardetii sp. nov., Chryseobacterium carnis sp. nov., Chryseobacterium lactis sp. nov., Chryseobacterium nakagawai sp. nov. and Chryseobacterium taklimakanense comb. nov.	Holmes B, Steigerwalt AG, Nicholson AC	Int J Syst Evol Microbiol	10.1099/ijs.0.054353-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31161

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27489 (see below)

#62359 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60564

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#91689

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID411771.1 )

#27489

IJSEM 4639 2013 ( DOI 10.1099/ijs.0.054353-0 , PubMed 23934253 )

* These data were automatically processed and therefore are not curated

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Chryseobacterium sp. L7

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