Name: Algibacter lectus WS-MY22
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 134060

Type strain:

Species: Algibacter lectus

Strain Designation: WS-MY22

Culture col. no.: KCTC 32381, CECT 8301

Strain history: <- JH Yoon, Sungkyunkwan Univ., Korea

NCBI tax ID(s): 221126 (species)

SI-ID 391608

KCTC 32381, CECT 8301

Special Collections

Other strains from Algibacter lectus

Section

Algibacter lectus WS-MY22 is an aerobe, Gram-negative, motile bacterium that was isolated from From brown algae, `Undaria pinnatifida'.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Algibacter*
	Species	**Algibacter lectus**
	Full Scientific Name (LPSN)	Algibacter lectus Nedashkovskaya et al. 2004

Synonym

Algibacter wandonensis

Information on morphological and physiological properties Morphology

[Ref.: #31156]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98.981

[Ref.: #31156]	Cell length	3.3 µm

[Ref.: #31156]	Cell width	0.3 µm

[Ref.: #31156]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #31156]	Motility	yes
[Ref.: #67771]	Motility	yes
[Ref.: #69480]	Motility	no Confidence in %92

[Ref.: #31156]	Flagellum arrangement	gliding
[Ref.: #67771]	Flagellum arrangement	gliding

[Ref.: #31156]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #31156]	growth	04-35 °C
[Ref.: #31156]	optimum	25 °C
[Ref.: #67771]	growth	25 °C

	pH	Kind of pH		pH
[Ref.: #31156]			optimum	7.5
[Ref.: #31156]			growth	5.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %90.442

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31156]		NaCl		growth	0.5-6.0	%
[Ref.: #31156]		NaCl		optimum	2	%

[Ref.: #31156]	Observation	aggregates in clumps
[Ref.: #67771]	Observation	quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31156]	esculin ChEBI	+	hydrolysis
[Ref.: #31156]	galactose ChEBI	+	carbon source
[Ref.: #31156]	glucose ChEBI	+	carbon source
[Ref.: #31156]	sucrose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #31156]	acid phosphatase	+	3.1.3.2
[Ref.: #31156]	alkaline phosphatase	+	3.1.3.1
[Ref.: #31156]	catalase	+	1.11.1.6
[Ref.: #31156]	cytochrome oxidase	+	1.9.3.1
[Ref.: #31156]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67771]	Sample type/isolated from	From brown algae, `Undaria pinnatifida'
[Ref.: #67771]	Geographic location (country and/or sea, region)	reservoir, Wando
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered

#Built environment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KC987358 (>99% sequence identity) for Algibacter lectus from Microbeatlas

Aquatic Samples	252
Soil Samples	20
Animal Samples	156
Plant Samples	1
Total Samples	429

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31156]	Algibacter wandonensis 16S ribosomal RNA gene, partial sequence	KC987358	1443	GenBank ENA	1343161 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Algibacter lectus CECT 8301	GCA_004368925	scaffold	GenBank ENA	221126 tax ID	*
[Ref.: #66792]	Algibacter lectus KCTC 32381	GCA_009807485	contig	GenBank ENA	221126 tax ID	*
[Ref.: #66792]	Algibacter lectus WS-MY22	GCA_009830375	scaffold	GenBank ENA	221126 tax ID	*
[Ref.: #66792]	Algibacter wandonensis strain CECT 8301	1343161.3	wgs	PATRIC	221126 tax ID	*
[Ref.: #66792]	Algibacter wandonensis strain KCTC 32381	1343161.5	wgs	PATRIC	221126 tax ID	*
[Ref.: #66792]	Algibacter wandonensis strain WS-MY22	1343161.6	wgs	PATRIC	221126 tax ID	*

[Ref.: #67771]

GC-content

35.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Algibacter lectus CECT 8301 NCBI: GCA_004368925.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.981	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.927	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	89.774	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.442	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	92	yes

Availability in culture collections External links

[Ref.: #31156]

Culture collection no.

KCTC 32381, CECT 8301

[Ref.: #91687]

SI-ID 391608

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Spongiivirga citrea gen. nov., sp. nov., a new marine bacterium of the family Flavobacteriaceae isolated from a marine sponge.	Yoon J, Adachi K, Kasai H, Lee MK	Curr Microbiol	10.1007/s00284-014-0682-9	2014	*
Phylogeny	Reclassification of Algibacter wandonensis as a Later Heterotypic Synonym of Algibacter lectus Based on Whole-Genome Sequence Analysis.	Liu A, Wang H, Yang YY, Xue QJ, Li XZ	Curr Microbiol	10.1007/s00284-021-02356-5	2021	*
Phylogeny	Algibacter pacificus sp. nov., isolated from a deep-sea seamount.	Liu J, Cai SD, Wang YJ, Wang Q, Zhang DC	Int J Syst Evol Microbiol	10.1099/ijsem.0.004119	2020	*
Phylogeny	Algibacter wandonensis sp. nov., isolated from sediment around a brown algae (Undaria pinnatifida) reservoir.	Yoon JH, Park S	Int J Syst Evol Microbiol	10.1099/ijs.0.053983-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31156

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27484 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#91687

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID391608.1 )

#27484

IJSEM 4771 2013 ( DOI 10.1099/ijs.0.053983-0 , PubMed 23996835 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Algibacter wandonensis in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Algibacter lectus CECT 8301

Change proposal

Change proposal