Name: Algibacter lectus WS-MY22
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134060

Type strain:

Species: Algibacter lectus

Strain Designation: WS-MY22

Culture col. no.: KCTC 32381, CECT 8301

Strain history: <- JH Yoon, Sungkyunkwan Univ., Korea

NCBI tax ID(s): 221126 (species)

SI-ID 391608

KCTC 32381, CECT 8301

Other strains from Algibacter lectus

A. lectus M-3Alg 15-1, DSM 15365, KCTC 12103, ... (type strain)
A. lectus JCM 19274
A. lectus JCM 19300

Section

Algibacter lectus WS-MY22 is an aerobe, Gram-negative, motile bacterium that was isolated from From brown algae, `Undaria pinnatifida'.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Algibacter*
	Species	**Algibacter lectus**
	Full Scientific Name (LPSN)	Algibacter lectus Nedashkovskaya et al. 2004

Synonym

Algibacter wandonensis

Information on morphological and physiological properties Morphology

[Ref.: #31156]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #31156]	Cell length	3.3 µm

[Ref.: #31156]	Cell width	0.3 µm

[Ref.: #31156]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #31156]	Motility	yes
[Ref.: #67771]	Motility	yes

[Ref.: #31156]	Flagellum arrangement	gliding
[Ref.: #67771]	Flagellum arrangement	gliding

[Ref.: #31156]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #31156]	growth	04-35 °C
[Ref.: #31156]	optimum	25 °C
[Ref.: #67771]	growth	25 °C

[Ref.: #31156]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31156]			optimum	7.5
[Ref.: #31156]			growth	5.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31156]		NaCl		growth	0.5-6.0	%
[Ref.: #31156]		NaCl		optimum	2	%

[Ref.: #31156]	Observation	aggregates in clumps
[Ref.: #67771]	Observation	quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31156]	esculin ChEBI	+	hydrolysis
[Ref.: #31156]	galactose ChEBI	+	carbon source
[Ref.: #31156]	glucose ChEBI	+	carbon source
[Ref.: #31156]	sucrose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #31156]	acid phosphatase	+	3.1.3.2
[Ref.: #31156]	alkaline phosphatase	+	3.1.3.1
[Ref.: #31156]	catalase	+	1.11.1.6
[Ref.: #31156]	cytochrome oxidase	+	1.9.3.1
[Ref.: #31156]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67771]	Sample type/isolated from	From brown algae, `Undaria pinnatifida'
[Ref.: #67771]	Geographic location (country and/or sea, region)	reservoir, Wando
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered

#Built environment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KC987358 (>99% sequence identity) for Algibacter lectus from Microbeatlas

Aquatic Samples	252
Soil Samples	20
Animal Samples	156
Plant Samples	1
Total Samples	429

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31156]	Algibacter wandonensis 16S ribosomal RNA gene, partial sequence	KC987358	1443	GenBank	1343161 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Algibacter lectus CECT 8301	GCA_004368925	scaffold	GenBank	221126 tax ID	*
[Ref.: #66792]	Algibacter lectus KCTC 32381	GCA_009807485	contig	GenBank	221126 tax ID	*
[Ref.: #66792]	Algibacter lectus WS-MY22	GCA_009830375	scaffold	GenBank	221126 tax ID	*
[Ref.: #66792]	Algibacter wandonensis strain CECT 8301	1343161.3	wgs	PATRIC	221126 tax ID	*
[Ref.: #66792]	Algibacter wandonensis strain KCTC 32381	1343161.5	wgs	PATRIC	221126 tax ID	*
[Ref.: #66792]	Algibacter wandonensis strain WS-MY22	1343161.6	wgs	PATRIC	221126 tax ID	*

[Ref.: #67771]

GC-content

35.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Algibacter lectus CECT 8301 NCBI: GCA_004368925.1
[Ref.: #69480]	motile	no	85.414	no
[Ref.: #69480]	flagellated	no	93.029	yes
[Ref.: #69480]	gram-positive	no	98.072	no
[Ref.: #69480]	anaerobic	no	99.724	no
[Ref.: #69480]	aerobic	yes	93.61	no
[Ref.: #69480]	halophile	no	71.812	no
[Ref.: #69480]	spore-forming	no	96.879	no
[Ref.: #69480]	glucose-util	yes	87.737	no
[Ref.: #69480]	thermophile	no	99.357	no
[Ref.: #69480]	glucose-ferment	no	88.579	no

Availability in culture collections External links

[Ref.: #31156]

Culture collection no.

KCTC 32381, CECT 8301

[Ref.: #91687]

SI-ID 391608

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Spongiivirga citrea gen. nov., sp. nov., a new marine bacterium of the family Flavobacteriaceae isolated from a marine sponge.	Yoon J, Adachi K, Kasai H, Lee MK	Curr Microbiol	10.1007/s00284-014-0682-9	2014	*
Phylogeny	Reclassification of Algibacter wandonensis as a Later Heterotypic Synonym of Algibacter lectus Based on Whole-Genome Sequence Analysis.	Liu A, Wang H, Yang YY, Xue QJ, Li XZ	Curr Microbiol	10.1007/s00284-021-02356-5	2021	*
Phylogeny	Algibacter pacificus sp. nov., isolated from a deep-sea seamount.	Liu J, Cai SD, Wang YJ, Wang Q, Zhang DC	Int J Syst Evol Microbiol	10.1099/ijsem.0.004119	2020	*
Phylogeny	Algibacter wandonensis sp. nov., isolated from sediment around a brown algae (Undaria pinnatifida) reservoir.	Yoon JH, Park S	Int J Syst Evol Microbiol	10.1099/ijs.0.053983-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31156

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27484 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#91687

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID391608.1 )

#27484

IJSEM 4771 2013 ( DOI 10.1099/ijs.0.053983-0 , PubMed 23996835 )

* These data were automatically processed and therefore are not curated

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Algibacter lectus CECT 8301

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