Name: Flavobacterium ginsengisoli KCTC 23318
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134059

Type strain:

Species: Flavobacterium ginsengisoli

Culture col. no.: KCTC 23318, JCM 17336, DCY 54, BCRC 81040, CIP 110819

Strain history: CIP <- 2014, JCM <- 2010, DC. Yang, Kyung Hee Univ., Gyeonggi-do, Korea: strain DCY54

NCBI tax ID(s): 871694 (species)

SI-ID 413994

CIP 110819

Section

Flavobacterium ginsengisoli KCTC 23318 is an aerobe, Gram-negative, motile bacterium that was isolated from Soil of a field cultivated with ginseng.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium ginsengisoli**
	Full Scientific Name (LPSN)	Flavobacterium ginsengisoli Kim et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #31154]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #119626]	Gram stain	negative

[Ref.: #31154]	Cell length	3.85 µm

[Ref.: #31154]	Cell width	0.75 µm

[Ref.: #31154]	Cell shape	rod-shaped
[Ref.: #119626]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #31154]	Motility	yes
[Ref.: #119626]	Motility	no
[Ref.: #67771]	Motility	yes

[Ref.: #31154]	Flagellum arrangement	gliding
[Ref.: #67771]	Flagellum arrangement	gliding

[Ref.: #31154]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #41606]

Culture medium

MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati

[Ref.: #41606]

Culture medium growth

[Ref.: #41606]

Culture medium composition

expand / minimize

[Ref.: #119626]

Culture medium

CIP Medium 566

[Ref.: #119626]

Culture medium growth

[Ref.: #119626]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #31154]	growth	04-35 °C
[Ref.: #31154]	optimum	27.5 °C
[Ref.: #41606]	growth	30 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #31154]	Temperature range	mesophilic
[Ref.: #41606]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31154]			optimum	6
[Ref.: #31154]			growth	05-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31154]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #31154]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31154]		NaCl		growth	0-2	%
[Ref.: #31154]		NaCl		optimum	0.5	%

[Ref.: #31154]	Observation	aggregates in clumps
[Ref.: #67771]	Observation	quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31154]	arabinose ChEBI	+	carbon source
[Ref.: #31154]	esculin ChEBI	+	hydrolysis
[Ref.: #31154]	glucose ChEBI	+	carbon source
[Ref.: #31154]	maltose ChEBI	+	carbon source
[Ref.: #31154]	mannose ChEBI	+	carbon source
[Ref.: #31154]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #31154]	nitrate ChEBI	+	reduction

	Enzyme	Enzyme activity	EC number
[Ref.: #31154]	acid phosphatase	+	3.1.3.2
[Ref.: #31154]	alkaline phosphatase	+	3.1.3.1
[Ref.: #31154]	alpha-galactosidase	+	3.2.1.22
[Ref.: #31154]	catalase	+	1.11.1.6
[Ref.: #31154]	cytochrome oxidase	+	1.9.3.1
[Ref.: #31154]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil of a field cultivated with ginseng
[Ref.: #67770]	Geographic location (country and/or sea, region)	Yongin Province
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil of a field cultivated with ginseng
[Ref.: #67771]	Geographic location (country and/or sea, region)	Yongin province
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #119626]	Sample type/isolated from	Environment, Soil of a field cultivated with ginseng
[Ref.: #119626]	Geographic location (country and/or sea, region)	Yongin Province
[Ref.: #119626]	Country	Republic of Korea
[Ref.: #119626]	Country ISO 3 Code	KOR
[Ref.: #119626]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence HM776705 (>99% sequence identity) for Flavobacterium from Microbeatlas

Aquatic Samples	12
Soil Samples	15
Animal Samples	2
Plant Samples	1
Total Samples	30

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #119626]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31154]	Flavobacterium ginsengisoli strain DCY54 16S ribosomal RNA gene, partial sequence	HM776705	1408	GenBank	871694 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavobacterium ginsengisoli KCTC 23318	GCA_029625315	complete	GenBank	871694 tax ID	*

[Ref.: #31154]

GC-content

33.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium ginsengisoli KCTC 23318 NCBI: GCA_029625315.1
[Ref.: #69480]	motile	no	89.626	no
[Ref.: #69480]	flagellated	no	94.514	no
[Ref.: #69480]	gram-positive	no	97.193	yes
[Ref.: #69480]	anaerobic	no	98.393	yes
[Ref.: #69480]	aerobic	yes	81.786	no
[Ref.: #69480]	halophile	no	92.97	no
[Ref.: #69480]	spore-forming	no	94.077	yes
[Ref.: #69480]	glucose-ferment	no	84.098	no
[Ref.: #69480]	thermophile	no	97.483	no
[Ref.: #69480]	glucose-util	yes	88.711	yes

Availability in culture collections External links

[Ref.: #31154]

Culture collection no.

KCTC 23318, JCM 17336, DCY 54, BCRC 81040, CIP 110819

[Ref.: #91686]

SI-ID 413994

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium fluviatile sp. nov., isolated from a freshwater creek.	Chen WM, Su CL, Young CC, Sheu SY	Int J Syst Evol Microbiol	10.1099/ijsem.0.002659	2018	*
Phylogeny	Flavobacterium daemonensis sp. nov., isolated from Daemo Mountain soil.	Ngo HTT, Kook M, Yi TH	Int J Syst Evol Microbiol	10.1099/ijs.0.000051	2015	*
Phylogeny	Flavobacterium ginsengisoli sp. nov., isolated from soil of a ginseng field.	Kim YJ, Kim SR, Nguyen NL, Yang DC	Int J Syst Evol Microbiol	10.1099/ijs.0.053819-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31154

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27482 (see below)

#41606 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#91686

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID413994.1 )

#119626 Collection of Institut Pasteur ; Curators of the CIP; CIP 110819

#27482

IJSEM 4289 2013 ( DOI 10.1099/ijs.0.053819-0 , PubMed 23912719 )

* These data were automatically processed and therefore are not curated

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