Name: Fretibacter rubidus JC2236
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134058

Type strain:

Species: Fretibacter rubidus

Strain Designation: JC2236

Culture col. no.: KACC 16935, JCM 15585

Strain history: J. Chun JC2236.

NCBI tax ID(s): 570162 (species)

Section

Fretibacter rubidus JC2236 is a Gram-negative, rod-shaped bacterium that was isolated from seawater.

Gram-negative
rod-shaped
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Caulobacterales*
	Family	*Hyphomonadaceae*
	Genus	*Fretibacter*
	Species	**Fretibacter rubidus**
	Full Scientific Name (LPSN)	Fretibacter rubidus Cho et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #31153]	Gram stain	negative

[Ref.: #31153]	Cell length	2.95 µm

[Ref.: #31153]	Cell width	0.45 µm

[Ref.: #31153]	Cell shape	rod-shaped

[Ref.: #31153]	Motility	no

[Ref.: #31153]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #31153]	growth	15-30 °C
[Ref.: #31153]	optimum	30 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #31153]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31153]			optimum	8.5
[Ref.: #31153]			growth	06-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31153]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31153]		NaCl		growth	03-05	%
[Ref.: #31153]		NaCl		optimum	3	%

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31153]		esculin ChEBI	+	hydrolysis

	Enzyme	Enzyme activity	EC number
[Ref.: #31153]	acid phosphatase	+	3.1.3.2
[Ref.: #31153]	alkaline phosphatase	+	3.1.3.1
[Ref.: #31153]	alpha-galactosidase	+	3.2.1.22
[Ref.: #31153]	catalase	+	1.11.1.6
[Ref.: #31153]	cytochrome oxidase	+	1.9.3.1
[Ref.: #31153]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31153]	Sample type/isolated from	seawater

[Ref.: #67770]	Sample type/isolated from	Seawater
[Ref.: #67770]	Geographic location (country and/or sea, region)	Jeju Island
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ965646 (>99% sequence identity) for Fretibacter rubidus subclade from Microbeatlas

Aquatic Samples	672
Soil Samples	2
Animal Samples	10
Plant Samples	1
Total Samples	685

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31153]	Fretibacter rubidus strain JC2236 16S ribosomal RNA gene, partial sequence	JQ965646	1412	GenBank	570162 tax ID

[Ref.: #31153]

GC-content

49.3 mol%

Availability in culture collections External links

[Ref.: #31153]

Culture collection no.

KACC 16935, JCM 15585

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Fretibacter rubidus gen. nov., sp. nov., isolated from seawater.	Cho YJ, Yi H, Seo B, Cho KH, Chun J	Int J Syst Evol Microbiol	10.1099/ijs.0.053751-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31153

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27481 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#27481

IJSEM 4633 2013 ( DOI 10.1099/ijs.0.053751-0 , PubMed 23934249 )

* These data were automatically processed and therefore are not curated

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