Name: Halobellus inordinatus YC20
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 134047

Type strain:

Species: Halobellus inordinatus

Strain Designation: YC20

Culture col. no.: CGMCC 1.12120, JCM 18361

Strain history: H.-L. Cui; Jiangsu Univ., China; YC20.

NCBI tax ID(s): 1126236 (species)

Special Collections

Other strains from Halobellus inordinatus

Section

Halobellus inordinatus YC20 is an aerobe, Gram-negative, motile archaeon that was isolated from hypersaline environment.

Gram-negative
motile
aerobe
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Archaea*
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Halobacteriales*
	Family	*Haloferacaceae*
	Genus	*Halobellus*
	Species	**Halobellus inordinatus**
	Full Scientific Name (LPSN)	Halobellus inordinatus Qiu et al. 2013

Synonym

Halobellus ramosii

Information on morphological and physiological properties Morphology

[Ref.: #31132]	Gram stain	negative

[Ref.: #31132]	Motility	yes

[Ref.: #31132]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #31132]	growth	20-50 °C
[Ref.: #31132]	optimum	37 °C
[Ref.: #67770]	growth	37 °C

	pH	Kind of pH		pH
[Ref.: #31132]			optimum	8
[Ref.: #31132]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31132]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31132]		NaCl		growth	10-28	%
[Ref.: #31132]		NaCl		optimum	18	%

[Ref.: #31132]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31132]	acetate ChEBI	+	carbon source
[Ref.: #31132]	alanine ChEBI	+	carbon source
[Ref.: #31132]	glutamate ChEBI	+	carbon source
[Ref.: #31132]	glycerol ChEBI	+	carbon source
[Ref.: #31132]	lactate ChEBI	+	carbon source
[Ref.: #31132]	malate ChEBI	+	carbon source
[Ref.: #31132]	nitrate ChEBI	+	reduction
[Ref.: #31132]	ornithine ChEBI	+	carbon source
[Ref.: #31132]	pyruvate ChEBI	+	carbon source
[Ref.: #31132]	succinate ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #31132]		hydrogen sulfide ChEBI	yes

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31132]		catalase	+	1.11.1.6
[Ref.: #31132]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31132]	Sample type/isolated from	hypersaline environment

[Ref.: #67770]	Sample type/isolated from	Brine sample from Yuncheng salt lake at Yuncheng
[Ref.: #67770]	Geographic location (country and/or sea, region)	Shanxi Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Condition

#Saline

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ237122 (>99% sequence identity) for Halobellus from Microbeatlas

Aquatic Samples	25
Soil Samples	8
Animal Samples
Plant Samples
Total Samples	33

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31132]	Halobellus inordinatus strain YC20 16S ribosomal RNA gene, partial sequence	JQ237122	1473	GenBank ENA	1126236 tax ID
[Ref.: #124043]	Halobellus inordinatus gene for 16S ribosomal RNA, partial sequence, strain: JCM 18361.	AB935405	1473	GenBank ENA	1126236 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halobellus inordinatus YC20	GCA_024464655	contig	GenBank ENA	1126236 tax ID	*

[Ref.: #31132]	GC-content	65.8 mol%
[Ref.: #67770]	GC-content	65.8 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halobellus inordinatus YC20 NCBI: GCA_024464655.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	77.64	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	81.959	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	82.146	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	86.745	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	76.061	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	85.5	no

Availability in culture collections External links

[Ref.: #31132]

Culture collection no.

CGMCC 1.12120, JCM 18361

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halobellus ramosii sp. nov., an extremely halophilic archaeon isolated from a saline-wetland wildfowl reserve.	Perez-Davo A, Aguilera M, Gonzalez-Paredes A, Lujan Jimenez-Pranteda M, Monteoliva-Sanchez M	Int J Syst Evol Microbiol	10.1099/ijsem.0.000503	2015	*
Phylogeny	Halobellus inordinatus sp. nov., from a marine solar saltern and an inland salt lake of China.	Qiu XX, Mou YZ, Zhao ML, Zhang WJ, Han D, Ren M, Cui HL	Int J Syst Evol Microbiol	10.1099/ijs.0.053066-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31132

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27461 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#27461

IJSEM 3975 2013 ( DOI 10.1099/ijs.0.053066-0 , PubMed 23728369 )

* These data were automatically processed and therefore are not curated

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