Name: Rhizobium freirei IPR-Pv81
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134045

Type strain:

Species: Rhizobium freirei

Strain Designation: IPR-Pv81

Culture col. no.: CNPSo 122, SEMIA 4080, WDCM 440, PRF 81

NCBI tax ID(s): 363754 (strain), 1353277 (species)

Section

Rhizobium freirei IPR-Pv81 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from plant associated.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Rhizobium*
	Species	**Rhizobium freirei**
	Full Scientific Name (LPSN)	Rhizobium freirei Dall'Agnol et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #31128]	Gram stain	negative

[Ref.: #31128]	Cell shape	rod-shaped

[Ref.: #31128]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #31128]			growth	25-40 °C
[Ref.: #31128]			optimum	26.5 °C

[Ref.: #31128]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #31128]			optimum	6
[Ref.: #31128]			growth	04-07

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31128]

Oxygen tolerance

aerobe

[Ref.: #31128]

Ability of spore formation

[Ref.: #31128]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31128]	arabinose ChEBI	+	carbon source
[Ref.: #31128]	cellobiose ChEBI	+	carbon source
[Ref.: #31128]	esculin ChEBI	+	hydrolysis
[Ref.: #31128]	fructose ChEBI	+	carbon source
[Ref.: #31128]	fucose ChEBI	+	carbon source
[Ref.: #31128]	galactose ChEBI	+	carbon source
[Ref.: #31128]	glucose ChEBI	+	carbon source
[Ref.: #31128]	glycerol ChEBI	+	carbon source
[Ref.: #31128]	glycogen ChEBI	+	carbon source
[Ref.: #31128]	L-arabitol ChEBI	+	carbon source
[Ref.: #31128]	lactose ChEBI	+	carbon source
[Ref.: #31128]	maltose ChEBI	+	carbon source
[Ref.: #31128]	mannitol ChEBI	+	carbon source
[Ref.: #31128]	mannose ChEBI	+	carbon source
[Ref.: #31128]	melibiose ChEBI	+	carbon source
[Ref.: #31128]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #31128]	raffinose ChEBI	+	carbon source
[Ref.: #31128]	rhamnose ChEBI	+	carbon source
[Ref.: #31128]	ribitol ChEBI	+	carbon source
[Ref.: #31128]	ribose ChEBI	+	carbon source
[Ref.: #31128]	salicin ChEBI	+	carbon source
[Ref.: #31128]	sorbitol ChEBI	+	carbon source
[Ref.: #31128]	sucrose ChEBI	+	carbon source
[Ref.: #31128]	trehalose ChEBI	+	carbon source
[Ref.: #31128]	xylitol ChEBI	+	carbon source
[Ref.: #31128]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31128]	Sample type/isolated from	plant associated
* marker position based on {}

Isolation sources categories

#Host

#Plants

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU488742 (>99% sequence identity) for Rhizobiaceae from Microbeatlas

Aquatic Samples	403
Soil Samples	3171
Animal Samples	1252
Plant Samples	1013
Total Samples	5839

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31128]	Rhizobium freirei PRF 81 16S ribosomal RNA gene, partial sequence	EU488742	1422	GenBank	363754 tax ID

[Ref.: #31128]

GC-content

59.9 mol%

Availability in culture collections External links

[Ref.: #31128]

Culture collection no.

CNPSo 122, SEMIA 4080, WDCM 440, PRF 81

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rhizobium dioscoreae sp. nov., a plant growth-promoting bacterium isolated from yam (Dioscorea species).	Ouyabe M, Tanaka N, Shiwa Y, Fujita N, Kikuno H, Babil P, Shiwachi H	Int J Syst Evol Microbiol	10.1099/ijsem.0.004381	2020	*
Metabolism	Hydrogen-uptake genes improve symbiotic efficiency in common beans (Phaseolus vulgaris L.).	Torres AR, Brito B, Imperial J, Palacios JM, Ciampitti IA, Ruiz-Argueso T, Hungria M	Antonie Van Leeuwenhoek	10.1007/s10482-019-01381-6	2020	*
Phylogeny	Characterization of rhizobia isolates obtained from nodules of wild genotypes of common bean.	Cardoso AA, Andraus MP, Borba TC, Martin-Didonet CC, Ferreira EP	Braz J Microbiol	10.1016/j.bjm.2016.09.002	2016	*
Phylogeny	Rhizobium freirei sp. nov., a symbiont of Phaseolus vulgaris that is very effective at fixing nitrogen.	Dall'Agnol RF, Ribeiro RA, Ormeno-Orrillo E, Rogel MA, Delamuta JRM, Andrade DS, Martinez-Romero E, Hungria M	Int J Syst Evol Microbiol	10.1099/ijs.0.052928-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31128

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27457 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#27457

IJSEM 4167 2013 ( DOI 10.1099/ijs.0.052928-0 , PubMed 23771622 )

* These data were automatically processed and therefore are not curated

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