Name: Lactococcus formosensis 516
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 134042

Type strain:

Species: Lactococcus formosensis

Strain Designation: 516

Culture col. no.: NBRC 109475, BCRC 80576, JCM 31966, LMG 29105

Strain history: LMG 29105 <-- NBRC 109475 <-- Y.-S. Chen; Ming Chuan Univ., Taiwan; 516.

NCBI tax ID(s): 1281486 (species)

SI-ID 391807

NBRC 109475, BCRC 80576, LMG 29105

Special Collections

Section

Lactococcus formosensis 516 is a Gram-positive, ovoid-shaped bacterium that was isolated from fermented broccoli stems.

Gram-positive
ovoid-shaped
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Streptococcaceae*
	Genus	*Lactococcus*
	Species	**Lactococcus formosensis**
	Full Scientific Name (LPSN)	Lactococcus formosensis Chen et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #31125]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %91.973

[Ref.: #31125]	Cell shape	ovoid-shaped

[Ref.: #31125]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93.5

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #31125]			growth	20-37 °C
[Ref.: #67770]			growth	37 °C

	pH	Kind of pH		pH
[Ref.: #31125]			optimum	5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %99

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31125]		NaCl		growth	04-06	%
[Ref.: #31125]		NaCl		optimum	2	%

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31125]		mannitol ChEBI	+	carbon source
[Ref.: #31125]		ribose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31125]		acid phosphatase	+	3.1.3.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31125]	Sample type/isolated from	fermented broccoli stems

[Ref.: #67770]	Sample type/isolated from	Yan-tsai-shin (fermented broccoli stems)
[Ref.: #67770]	Host species	Yan-tsai-shin
[Ref.: #67770]	Country	Taiwan, Province of China
[Ref.: #67770]	Country ISO 3 Code	TWN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Vegetable (incl. Grains)
#Engineered	#Food production	#Fermented

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31125]	Lactococcus formosensis gene for 16S ribosomal RNA, partial sequence	AB775178	1515	GenBank ENA	1281486 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Lactococcus formosensis NBRC 109475	GCA_018403745	contig	GenBank ENA	1281486 tax ID	*
[Ref.: #66792]	Lactococcus formosensis strain NBRC 109475	1281486.5	wgs	PATRIC	1281486 tax ID	*

[Ref.: #31125]	GC-content	38.1 mol%
[Ref.: #67770]	GC-content	38.1 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lactococcus formosensis strain NBRC 109475 PATRIC: 1281486.5
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	99	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lactococcus formosensis strain NBRC 109475 PATRIC: 1281486.5
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	91.973	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	90.26	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	81.638	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	97.354	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.5	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	93.5	yes

Availability in culture collections External links

[Ref.: #31125]

Culture collection no.

NBRC 109475, BCRC 80576, JCM 31966, LMG 29105

[Ref.: #91682]

SI-ID 391807

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Proposal of Lactococcus garvieae subsp. bovis Varsha and Nampoothiri 2016 as a later heterotypic synonym of Lactococcus formosensis Chen et al. 2014 and Lactococcus formosensis subsp. bovis comb. nov.	Zhang HX, Tian WL, Gu CT	Int J Syst Evol Microbiol	10.1099/ijsem.0.004980	2021	*
Phylogeny	Lactococcus formosensis sp. nov., a lactic acid bacterium isolated from yan-tsai-shin (fermented broccoli stems).	Chen YS, Otoguro M, Lin YH, Pan SF, Ji SH, Yu CR, Liou MS, Chang YC, Wu HC, Yanagida F	Int J Syst Evol Microbiol	10.1099/ijs.0.052811-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31125

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27454 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91682

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID391807.1 )

#27454

IJSEM 146 2014 ( DOI 10.1099/ijs.0.052811-0 , PubMed 24067730 )

* These data were automatically processed and therefore are not curated

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Lactococcus formosensis strain NBRC 109475

Lactococcus formosensis strain NBRC 109475

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