Pseudonocardia tropica | Type strain | DSM 45199, CCTCC AA 208018, YIM 61452

Strain identifier

BacDive ID: 13404

Type strain:

Species: Pseudonocardia tropica

Culture col. no.: DSM 45199, CCTCC AA 208018, YIM 61452

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	31-03-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Actinobacteria
	Class	Actinobacteria
	Order	Pseudonocardiales
	Family	Pseudonocardiaceae
	Genus	Pseudonocardia
	Species	Pseudonocardia tropica
	Full Scientific Name (PNU)	Pseudonocardia tropica Qin et al. 2010

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #29750]	Gram stain	positive
[Ref.: #29750]	Cell shape	rod-shaped
[Ref.: #29750]	Motility	no

[Ref.: #21391]	Colony color	Clay brown (8003)
[Ref.: #21391]	Incubation period	10-14 days
[Ref.: #21391]	Cultivation medium used	ISP 2

[Ref.: #21391]	Colony color	Clay brown (8003)
[Ref.: #21391]	Incubation period	10-14 days
[Ref.: #21391]	Cultivation medium used	ISP 3

[Ref.: #21391]	Colony color	Beige brown (8024)
[Ref.: #21391]	Incubation period	10-14 days
[Ref.: #21391]	Cultivation medium used	ISP 4

[Ref.: #21391]	Colony color	Clay brown (8003)
[Ref.: #21391]	Incubation period	10-14 days
[Ref.: #21391]	Cultivation medium used	ISP 5

[Ref.: #21391]	Colony color	Ochre brown (8001)
[Ref.: #21391]	Incubation period	10-14 days
[Ref.: #21391]	Cultivation medium used	ISP 7

[Ref.: #21391]	Colony color	Nut brown (8011)
[Ref.: #21391]	Incubation period	10-14 days
[Ref.: #21391]	Cultivation medium used	Suter with tyrosine

[Ref.: #21391]	Colony color	Fawn brown (8007)
[Ref.: #21391]	Incubation period	10-14 days
[Ref.: #21391]	Cultivation medium used	Suter without tyrosine

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29750]		catalase	+	1.11.1.6

	Salt		Salt conc.
[Ref.: #21391]	NaCl	maximum	5	%
[Ref.: #29750]	NaCl	growth	0-10	%
[Ref.: #29750]	NaCl	optimum	1	%

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #21391]	517	-	not determinedn.d.	-	-	-	-	-	-	-	-	+	not determinedn.d.	-	-	-	-	-	-	not determinedn.d.	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #21391]	1032	not determinedn.d.	-	+/-	+/-	-	+/-	+/-	-	-	-	+/-	-	-	-	-	-	+/-	-	-	-

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #21391]	arabinose ChEBI	+
[Ref.: #29750]	cellobiose ChEBI	+	carbon source
[Ref.: #21391]	cellulose ChEBI	+
[Ref.: #21391]	fructose ChEBI	+
[Ref.: #29750]	fructose ChEBI	+	carbon source
[Ref.: #21391]	glucose ChEBI	+
[Ref.: #29750]	glucose ChEBI	+	carbon source
[Ref.: #29750]	maltose ChEBI	+	carbon source
[Ref.: #29750]	mannitol ChEBI	+	carbon source
[Ref.: #21391]	mannose ChEBI	+
[Ref.: #21391]	myo-inositol ChEBI	+
[Ref.: #29750]	nitrate ChEBI	+	reduction
[Ref.: #21391]	raffinose ChEBI	+
[Ref.: #21391]	rhamnose ChEBI	+
[Ref.: #21391]	sucrose ChEBI	+
[Ref.: #29750]	sucrose ChEBI	+	carbon source
[Ref.: #21391]	xylose ChEBI	+
[Ref.: #29750]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

[Ref.: #21391]	Multicellular complex forming ability	yes
[Ref.: #21391]	Multicellular complex name	Aerial Mycelium
[Ref.: #21391]	Multicellular complex color	Pure white (9010)
[Ref.: #21391]	Medium Name (multicellularity)	ISP 2

[Ref.: #21391]	Multicellular complex forming ability	yes
[Ref.: #21391]	Multicellular complex name	Aerial Mycelium
[Ref.: #21391]	Multicellular complex color	Cream (9001)
[Ref.: #21391]	Medium Name (multicellularity)	ISP 3

[Ref.: #21391]	Multicellular complex forming ability	yes
[Ref.: #21391]	Multicellular complex name	Aerial Mycelium
[Ref.: #21391]	Multicellular complex color	Traffic white (9016)
[Ref.: #21391]	Medium Name (multicellularity)	ISP 4

[Ref.: #21391]	Multicellular complex forming ability	yes
[Ref.: #21391]	Multicellular complex name	Aerial Mycelium
[Ref.: #21391]	Multicellular complex color	Beige (1001)
[Ref.: #21391]	Medium Name (multicellularity)	ISP 5

[Ref.: #21391]	Multicellular complex forming ability	no
[Ref.: #21391]	Medium Name (multicellularity)	ISP 7

[Ref.: #21391]	Multicellular complex forming ability	yes
[Ref.: #21391]	Multicellular complex name	Aerial Mycelium
[Ref.: #21391]	Multicellular complex color	Oyster white (1013)
[Ref.: #21391]	Medium Name (multicellularity)	Suter with tyrosine

[Ref.: #21391]	Multicellular complex forming ability	yes
[Ref.: #21391]	Multicellular complex name	Aerial Mycelium
[Ref.: #21391]	Multicellular complex color	Light grey (7035)
[Ref.: #21391]	Medium Name (multicellularity)	Suter without tyrosine

[Ref.: #15711]	Multimedia content
[Ref.: #15711]	Caption	Medium 553 28°C
[Ref.: #15711]	License/Copyright	(C) Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
[Ref.: #15711]	Intellectual property rights	© Leibniz-Institut DSMZ

[Ref.: #29750]

Observation

aggregates in chains

[Ref.: #29750]

Oxygen tolerance

aerobe

[Ref.: #29750]

Ability of spore formation

yes

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #15711]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553), 28°C

[Ref.: #15711]

Culture medium growth

[Ref.: #15711]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #21391]

Culture medium

ISP 2

[Ref.: #21391]

Culture medium growth

[Ref.: #21391]

Culture medium composition

expand / minimize

[Ref.: #21391]

Culture medium

ISP 3

[Ref.: #21391]

Culture medium growth

[Ref.: #21391]

Culture medium composition

expand / minimize

[Ref.: #21391]

Culture medium

ISP 4

[Ref.: #21391]

Culture medium growth

[Ref.: #21391]

Culture medium composition

expand / minimize

[Ref.: #21391]

Culture medium

ISP 5

[Ref.: #21391]

Culture medium growth

[Ref.: #21391]

Culture medium composition

expand / minimize

[Ref.: #21391]

Culture medium

ISP 7

[Ref.: #21391]

Culture medium growth

[Ref.: #21391]

Culture medium composition

expand / minimize

[Ref.: #21391]

Culture medium

Suter with tyrosine

[Ref.: #21391]

Culture medium growth

[Ref.: #21391]

Culture medium composition

expand / minimize

[Ref.: #21391]

Culture medium

Suter without tyrosine

[Ref.: #21391]

Culture medium growth

[Ref.: #21391]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #15711]	growth	28 ̊C
[Ref.: #29750]	growth	15-37 ̊C
[Ref.: #29750]	optimum	28 ̊C

[Ref.: #15711]	Temperature range	mesophilic
[Ref.: #29750]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29750]			optimum	7
[Ref.: #29750]			growth	06-09

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #15711]

Sample type/isolated from

surface-sterilized stem of Maytenus austroyunnanensis collected from the tropical rainforest

[Ref.: #15711]

Host species

Maytenus austroyunnanensis

[Ref.: #15711]

Geographic location (country and/or sea, region)

Yunnan Province, Xishuangbanna

[Ref.: #15711]

Country

China

[Ref.: #15711]

Country ISO 3 Code

CHN

[Ref.: #15711]

Continent

Asia

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Stem (Branch)
#Host Body-Site	#Plant	#Sterilized plant part
#Climate	#Hot	#Tropical

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #15711]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #15711]	GC-content	72.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29750]	GC-content	72.4 mol%

Sequence information:

	Sequence database	Sequence accession description	Sequence accession number	Sequence type	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #15711]	16S rRNA gene, Marker Gene (GenBank Direct submission)	Pseudonocardia tropica strain YIM 61452 16S ribosomal RNA gene, partial sequence	GQ906587 ENA	16S	1461	681289 tax ID

Availability in culture collectionsStrain availability

[Ref.: #15711]

Culture collection no.

DSM 45199, CCTCC AA 208018, YIM 61452

[Ref.: #15711]

Strain history

<- S.-K. Tang, YIM; YIM 61452 <- S. Qin and et al.

[Ref.: #20218]

Associated Passport(s) in StrainInfo

856931, 856930, 856929

References

#15711

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45199

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#21391

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#29750

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 ) - originally annotated from #26132 (see below)

#26132

IJSEM 2524 2010 ( DOI 10.1099/ijs.0.020099-0 )

* These References are textmined

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