Name: Aurantiacibacter odishensis JA747
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134033

Type strain:

Species: Aurantiacibacter odishensis

Strain Designation: JA747

Culture col. no.: KCTC 23981, NBRC 108930

NCBI tax ID(s): 1155476 (species)

Section

Aurantiacibacter odishensis JA747 is an aerobe, rod-shaped bacterium that was isolated from soil.

rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Erythrobacteraceae*
	Genus	*Aurantiacibacter*
	Species	**Aurantiacibacter odishensis**
	Full Scientific Name (LPSN)	Aurantiacibacter odishensis (Subhash et al. 2013) Xu et al. 2020

Synonym

Erythrobacter odishensis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.965

[Ref.: #31103]	Cell length	1.5 µm

[Ref.: #31103]	Cell width	0.55 µm

[Ref.: #31103]	Cell shape	rod-shaped

[Ref.: #31103]	Motility	no

[Ref.: #31103]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #31103]			growth	12-40 °C
[Ref.: #31103]			optimum	27.5 °C

[Ref.: #31103]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #31103]			optimum	7
[Ref.: #31103]			growth	6.2-9.1

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31103]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.987

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31103]		NaCl		growth	0-9	%
[Ref.: #31103]		NaCl		optimum	2	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31103]	2,3-butanediol ChEBI	+	carbon source
[Ref.: #31103]	2-oxopentanoate ChEBI	+	carbon source
[Ref.: #31103]	acetate ChEBI	+	carbon source
[Ref.: #31103]	alanine ChEBI	+	carbon source
[Ref.: #31103]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #31103]	asparagine ChEBI	+	carbon source
[Ref.: #31103]	dextrin ChEBI	+	carbon source
[Ref.: #31103]	DL-carnitine ChEBI	+	carbon source
[Ref.: #31103]	ethanolamine ChEBI	+	carbon source
[Ref.: #31103]	glucose ChEBI	+	carbon source
[Ref.: #31103]	glutamate ChEBI	+	carbon source
[Ref.: #31103]	glycogen ChEBI	+	carbon source
[Ref.: #31103]	histidine ChEBI	+	carbon source
[Ref.: #31103]	inosine ChEBI	+	carbon source
[Ref.: #31103]	itaconate ChEBI	+	carbon source
[Ref.: #31103]	L-alaninamide ChEBI	+	carbon source
[Ref.: #31103]	L-arabitol ChEBI	+	carbon source
[Ref.: #31103]	lactate ChEBI	+	carbon source
[Ref.: #31103]	lactose ChEBI	+	carbon source
[Ref.: #31103]	malonate ChEBI	+	carbon source
[Ref.: #31103]	maltose ChEBI	+	carbon source
[Ref.: #31103]	myo-inositol ChEBI	+	carbon source
[Ref.: #31103]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #31103]	ornithine ChEBI	+	carbon source
[Ref.: #31103]	phenylalanine ChEBI	+	carbon source
[Ref.: #31103]	proline ChEBI	+	carbon source
[Ref.: #31103]	propionate ChEBI	+	carbon source
[Ref.: #31103]	putrescine ChEBI	+	carbon source
[Ref.: #31103]	rhamnose ChEBI	+	carbon source
[Ref.: #31103]	ribitol ChEBI	+	carbon source
[Ref.: #31103]	sorbitol ChEBI	+	carbon source
[Ref.: #31103]	sucrose ChEBI	+	carbon source
[Ref.: #31103]	uridine ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31103]		catalase	+	1.11.1.6
[Ref.: #31103]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31103]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HE680094 (>99% sequence identity) for Aurantiacibacter from Microbeatlas

Aquatic Samples	375
Soil Samples	10
Animal Samples	29
Plant Samples
Total Samples	414

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31103]	Erythrobacter odishensis partial 16S rRNA gene, type strain JA747T, isolate A4	HE680094	1353	GenBank	1155476 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aurantiacibacter odishensis KCTC 23981	GCA_003605195	contig	GenBank	1155476 tax ID	*
[Ref.: #66792]	Erythrobacter odishensis strain KCTC 23981	1155476.3	wgs	PATRIC	1155476 tax ID	*
[Ref.: #66792]	Aurantiacibacter odishensis KCTC 23981	2839076428	draft	JGI IMG/M	1155476 tax ID	*

[Ref.: #31103]

GC-content

59.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Erythrobacter odishensis strain KCTC 23981 PATRIC: 1155476.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Erythrobacter odishensis strain KCTC 23981 PATRIC: 1155476.3
[Ref.: #69480]	motile	yes	53.182	yes
[Ref.: #69480]	gram-positive	no	97.695	no
[Ref.: #69480]	anaerobic	no	98.606	no
[Ref.: #69480]	aerobic	yes	95.092	yes
[Ref.: #69480]	halophile	no	83.387	no
[Ref.: #69480]	spore-forming	no	95.5	no
[Ref.: #69480]	flagellated	no	90.557	yes
[Ref.: #69480]	thermophile	no	96.067	yes
[Ref.: #69480]	glucose-util	yes	76.685	yes
[Ref.: #69480]	glucose-ferment	no	92.843	no

Availability in culture collections External links

[Ref.: #31103]

Culture collection no.

KCTC 23981, NBRC 108930

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31103

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27432 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#27432

IJSEM 4524 2013 ( DOI 10.1099/ijs.0.052183-0 , PubMed 23907224 )

* These data were automatically processed and therefore are not curated

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Erythrobacter odishensis strain KCTC 23981

Erythrobacter odishensis strain KCTC 23981

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