Name: Endozoicomonas euniceicola EF212
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134023

Type strain:

Species: Endozoicomonas euniceicola

Strain Designation: EF212

Culture col. no.: NCCB 100458, DSM 26535

Strain history: <- R. Kerr, Univ. Prince Edward Island, Charlottetown, Canada; EF212 <- R. Pike

NCBI tax ID(s): 1234143 (species)

SI-ID 401574

DSM 26535

Section

Endozoicomonas euniceicola EF212 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from octocoral.

Gram-negative
motile
rod-shaped
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Endozoicomonadaceae*
	Genus	*Endozoicomonas*
	Species	**Endozoicomonas euniceicola**
	Full Scientific Name (LPSN)	Endozoicomonas euniceicola Pike et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #31077]	Gram stain	negative

[Ref.: #31077]	Cell length	2 µm

[Ref.: #31077]	Cell width	0.7 µm

[Ref.: #31077]	Cell shape	rod-shaped

[Ref.: #31077]	Motility	yes

[Ref.: #31077]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #31077]			growth	15-30 °C
[Ref.: #31077]			optimum	26 °C

[Ref.: #31077]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #31077]			optimum	8
[Ref.: #31077]			growth	7.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31077]

Oxygen tolerance

facultative anaerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31077]		NaCl		growth	01-04	%
[Ref.: #31077]		NaCl		optimum	2.5	%

[Ref.: #31077]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31077]	acetate ChEBI	+	carbon source
[Ref.: #31077]	alanine ChEBI	+	carbon source
[Ref.: #31077]	asparagine ChEBI	+	carbon source
[Ref.: #31077]	aspartate ChEBI	+	carbon source
[Ref.: #31077]	dextrin ChEBI	+	carbon source
[Ref.: #31077]	esculin ChEBI	+	hydrolysis
[Ref.: #31077]	glucose ChEBI	+	carbon source
[Ref.: #31077]	glycerol ChEBI	+	carbon source
[Ref.: #31077]	inosine ChEBI	+	carbon source
[Ref.: #31077]	L-alaninamide ChEBI	+	carbon source
[Ref.: #31077]	lactose ChEBI	+	carbon source
[Ref.: #31077]	maltose ChEBI	+	carbon source
[Ref.: #31077]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #31077]	proline ChEBI	+	carbon source
[Ref.: #31077]	succinate ChEBI	+	carbon source
[Ref.: #31077]	threonine ChEBI	+	carbon source
[Ref.: #31077]	tween 40 ChEBI	+	carbon source
[Ref.: #31077]	tween 80 ChEBI	+	carbon source
[Ref.: #31077]	uridine ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #31077]	acid phosphatase	+	3.1.3.2
[Ref.: #31077]	alkaline phosphatase	+	3.1.3.1
[Ref.: #31077]	catalase	+	1.11.1.6
[Ref.: #31077]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31077]	Sample type/isolated from	octocoral

[Ref.: #21172]	Sample type/isolated from	gorgonian octocoral Eunicea fusca
[Ref.: #21172]	Geographic location (country and/or sea, region)	Hillsboro Ledge, off the coast of Florida (26°18.068'N, 80°04.112'W, at a depth of 12.5 m )
[Ref.: #21172]	Country	USA
[Ref.: #21172]	Country ISO 3 Code	USA
[Ref.: #21172]	Continent	North America
[Ref.: #21172]	Geographic location	26.3011°/-80.0685°
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Cnidaria (Corals)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21172]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21172]	Endozoicomonas euniceicola strain EF212 16S ribosomal RNA gene, partial sequence	JX488684	1522	ENA	1234143 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Endozoicomonas euniceicola EF212	GCA_025562755	complete	GenBank	1234143 tax ID	*

[Ref.: #21172]	GC-content	48.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #31077]	GC-content	48.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Endozoicomonas euniceicola EF212 NCBI: GCA_025562755.1
[Ref.: #69480]	motile	yes	76.465	yes
[Ref.: #69480]	flagellated	yes	63.468	no
[Ref.: #69480]	gram-positive	no	98.509	yes
[Ref.: #69480]	anaerobic	no	96.734	yes
[Ref.: #69480]	aerobic	no	65.425	yes
[Ref.: #69480]	halophile	yes	75.744	no
[Ref.: #69480]	spore-forming	no	94.414	no
[Ref.: #69480]	glucose-ferment	no	60.644	no
[Ref.: #69480]	thermophile	no	98.561	no
[Ref.: #69480]	glucose-util	yes	91.283	yes

Availability in culture collections External links

[Ref.: #21172]

Culture collection no.

NCCB 100458, DSM 26535

[Ref.: #91675]

SI-ID 401574

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Endozoicomonas euniceicola sp. nov. and Endozoicomonas gorgoniicola sp. nov., bacteria isolated from the octocorals Eunicea fusca and Plexaura sp., and an emended description of the genus Endozoicomonas.	Pike RE, Haltli B, Kerr RG	Int J Syst Evol Microbiol	10.1099/ijs.0.051490-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21172

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26535

#31077

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27406 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#91675

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401574.1 )

#27406

IJSEM 4294 2013 ( DOI 10.1099/ijs.0.051490-0 , PubMed 23832969 )

* These data were automatically processed and therefore are not curated

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