Name: Gluconacetobacter takamatsuzukensis T61213-20-1a
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 134019

Type strain:

Species: Gluconacetobacter takamatsuzukensis

Strain Designation: T61213-20-1a

Culture col. no.: JCM 19094, NCIMB 14859, LMG 27800

Strain history: J. Sugiyama T61213-20-1a.

NCBI tax ID(s): 1286190 (species)

SI-ID 388745

NCIMB 14859, JCM 19094

Special Collections

Other strains from Gluconacetobacter takamatsuzukensis

Section

When using BacDive for research please cite our paper

Gluconacetobacter takamatsuzukensis T61213-20-1a is an aerobe, Gram-negative, motile bacterium that was isolated from soil.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Gluconacetobacter*
	Species	**Gluconacetobacter takamatsuzukensis**
	Full Scientific Name (LPSN)	Gluconacetobacter takamatsuzukensis Nishijima et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #31071]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %96.328
[Ref.: #125439]	Gram stain	negative Confidence in %99.6

[Ref.: #31071]	Cell length	1.1 µm

[Ref.: #31071]	Cell width	0.75 µm

[Ref.: #31071]	Cell shape	rod-shaped

[Ref.: #31071]	Motility	yes

[Ref.: #31071]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #31071]	growth	15-30 °C
[Ref.: #31071]	optimum	25 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #31071]			growth	3.0-6.8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31071]	Oxygen tolerance	aerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %97.9

[Ref.: #31071]	Ability of spore formation	no
[Ref.: #125439]	Ability of spore formation	no Confidence in %95.6

[Ref.: #67770]

Observation

quinones: Q-10, Q-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31071]	acetate ChEBI	+	carbon source
[Ref.: #31071]	ethanol ChEBI	+	carbon source
[Ref.: #31071]	fructose ChEBI	+	carbon source
[Ref.: #31071]	gluconate ChEBI	+	carbon source
[Ref.: #31071]	glucose ChEBI	+	carbon source
[Ref.: #31071]	lactate ChEBI	+	carbon source
[Ref.: #31071]	mannitol ChEBI	+	carbon source
[Ref.: #31071]	ribose ChEBI	+	carbon source
[Ref.: #31071]	sucrose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31071]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31071]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil from the left side wall of the west side in the stone chamber exterior during dismantling work of the Takamatsuzuka Tumulus
[Ref.: #67770]	Geographic location (country and/or sea, region)	Asuka Village, Nara Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB778531 (>99% sequence identity) for Gluconacetobacter from Microbeatlas

Aquatic Samples	1
Soil Samples
Animal Samples	6
Plant Samples
Total Samples	7

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31071]	Gluconacetobacter takamatsuzukensis gene for 16S ribosomal RNA, partial sequence, strain: T61213-20-1a	AB778531	1416	GenBank ENA	1286190 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Gluconacetobacter takamatsuzukensis LMG 27800	GCA_014174275	contig	GenBank ENA	1286190 tax ID
[Ref.: #66792]	Gluconacetobacter takamatsuzukensis strain LMG 27800	1286190.4	wgs	PATRIC	1286190 tax ID	*
[Ref.: #66792]	Gluconacetobacter takamatsuzukensis LMG 27800	2910470307	draft	JGI IMG/M	1286190 tax ID	*

[Ref.: #31071]	GC-content	66.6 mol%
[Ref.: #67770]	GC-content	66.6 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Gluconacetobacter takamatsuzukensis strain LMG 27800 PATRIC: 1286190.4
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	96.328	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	93.068	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	86.842	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	88.873	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	97.56	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	69.605	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Gluconacetobacter takamatsuzukensis LMG 27800 NCBI: GCA_014174275
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	97.9
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	99.6
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	75.8
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	95.6

Availability in culture collections External links

[Ref.: #31071]

Culture collection no.

JCM 19094, NCIMB 14859, LMG 27800

[Ref.: #91673]	SI-ID 388745	*
[Ref.: #91674]	SI-ID 390480	*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Gluconacetobacter tumulisoli sp. nov., Gluconacetobacter takamatsuzukensis sp. nov. and Gluconacetobacter aggeris sp. nov., isolated from Takamatsuzuka Tumulus samples before and during the dismantling work in 2007.	Nishijima M, Tazato N, Handa Y, Tomita J, Kigawa R, Sano C, Sugiyama J	Int J Syst Evol Microbiol	10.1099/ijs.0.051292-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31071

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27400 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91673

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID388745.1 )

#91674

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

#27400

IJSEM 3981 2013 ( DOI 10.1099/ijs.0.051292-0 , PubMed 23793855 )

* These data were automatically processed and therefore are not curated

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Gluconacetobacter takamatsuzukensis strain LMG 27800

Gluconacetobacter takamatsuzukensis LMG 27800

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