Name: Bacillus songklensis H1-1M
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 134009

Type strain:

Species: Bacillus songklensis

Strain Designation: H1-1M

Culture col. no.: KCTC 13881, CCUG 61889, CAU 1033

Strain history: <- WY Kim, Chung-Ang Univ.

NCBI tax ID(s): 1069116 (species)

SI-ID 409717

CCUG 61889

Special Collections

Section

When using BacDive for research please cite our paper

Bacillus songklensis H1-1M is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil.

Gram-positive
motile
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Bacillus*
	Species	**Bacillus songklensis**
	Full Scientific Name (LPSN)	Bacillus songklensis Kang et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #31045]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #31045]	Cell length	3.05 µm

[Ref.: #31045]	Cell width	1.05 µm

[Ref.: #31045]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #31045]	Motility	yes
[Ref.: #67771]	Motility	yes

[Ref.: #31045]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #31045]	growth	10-45 °C
[Ref.: #31045]	optimum	30 °C
[Ref.: #62725]	growth	30 °C
[Ref.: #67771]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #31045]			optimum	8
[Ref.: #31045]			growth	4.5-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31045]	Oxygen tolerance	aerobe
[Ref.: #62725]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #67771]	Type of spore	endospore
[Ref.: #67771]	Ability of spore formation	yes
[Ref.: #31045]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31045]		NaCl		growth	0-4	%

[Ref.: #67771]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31045]	fructose ChEBI	+	carbon source
[Ref.: #31045]	galactose ChEBI	+	carbon source
[Ref.: #31045]	glucose ChEBI	+	carbon source
[Ref.: #31045]	glycerol ChEBI	+	carbon source
[Ref.: #31045]	maltose ChEBI	+	carbon source
[Ref.: #31045]	mannitol ChEBI	+	carbon source
[Ref.: #31045]	melibiose ChEBI	+	carbon source
[Ref.: #31045]	ribitol ChEBI	+	carbon source
[Ref.: #31045]	sorbitol ChEBI	+	carbon source
[Ref.: #31045]	sucrose ChEBI	+	carbon source
[Ref.: #31045]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31045]		catalase	+	1.11.1.6
[Ref.: #31045]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31045]	Sample type/isolated from	soil

[Ref.: #62725]	Sample type/isolated from	Soil,non-saline
[Ref.: #62725]	Sampling date	2010-10-18
[Ref.: #62725]	Geographic location (country and/or sea, region)	Wang Sai Tong Waterfall
[Ref.: #62725]	Country	Thailand
[Ref.: #62725]	Country ISO 3 Code	THA
[Ref.: #62725]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From Wang Sai Thong Waterfall
[Ref.: #67771]	Geographic location (country and/or sea, region)	Hatyai
[Ref.: #67771]	Country	Thailand
[Ref.: #67771]	Country ISO 3 Code	THA
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JN036548 (>99% sequence identity) for Bacillus from Microbeatlas

Aquatic Samples	903
Soil Samples	3508
Animal Samples	605
Plant Samples	1499
Total Samples	6515

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31045]	Bacillus songklensis strain CAU 1033 16S ribosomal RNA gene, partial sequence	JN036548	1528	GenBank ENA	1069116 tax ID

[Ref.: #31045]

GC-content

41.1 mol%

Availability in culture collections External links

[Ref.: #31045]

Culture collection no.

KCTC 13881, CCUG 61889, CAU 1033

[Ref.: #91665]

SI-ID 409717

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacillus songklensis sp. nov., isolated from soil.	Kang H, Weerawongwiwat V, Kim JH, Sukhoom A, Kim W	Int J Syst Evol Microbiol	10.1099/ijs.0.050682-0	2013	*
Phylogeny	Bacillus spongiae sp. nov., isolated from sponge of Jeju Island.	Lee GE, Im WT, Park JS	J Microbiol	10.1007/s12275-018-7511-y	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31045

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27375 (see below)

#62725 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 61889
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91665

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID409717.1 )

#27375

IJSEM 4189 2013 ( DOI 10.1099/ijs.0.050682-0 , PubMed 23771626 )

* These data were automatically processed and therefore are not curated

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