Name: Pseudonocardia acaciae DSM 45401
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13400

Type strain:

Species: Pseudonocardia acaciae

Culture col. no.: DSM 45401, BCC 28481, NBRC 104274, NRRL B-24609, GMKU 095, TISTR 1862, JCM 16707, CIP 110060

Strain history: TISTR 1862 <-- K. Duangmal GMKU095.

NCBI tax ID(s): 1123023 (strain), 551276 (species)

Section

Pseudonocardia acaciae DSM 45401 is an aerobe, spore-forming, mesophilic bacterium that was isolated from roots of Acacia auriculiformis A. Cunn. ex. Benth..

Gram-positive
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Pseudonocardia*
	Species	**Pseudonocardia acaciae**
	Full Scientific Name (PNU)	Pseudonocardia acaciae Duangmal et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29165]	Gram stain	positive
[Ref.: #29165]	Motility	no

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %96.109

[Ref.: #29165]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16604]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #16604]

Culture medium growth

[Ref.: #16604]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #16604]

Culture medium composition

expand / minimize

[Ref.: #33650]

Culture medium

MEDIUM 116 - for Streptomyces, Nocardia, Streptosporangium and Mycobacterium chlorophenolicum

[Ref.: #33650]

Culture medium growth

[Ref.: #33650]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16604]	growth	37 °C
[Ref.: #29165]	growth	18-42 °C
[Ref.: #29165]	optimum	37 °C
[Ref.: #33650]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #16604]	Temperature range	mesophilic
[Ref.: #29165]	Temperature range	mesophilic
[Ref.: #33650]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29165]			optimum	6.5
[Ref.: #29165]			growth	5.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29165]

Oxygen tolerance

aerobe

[Ref.: #29165]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.688

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29165]		NaCl		growth	0-5	%
[Ref.: #29165]		NaCl		optimum	2.5	%

[Ref.: #29165]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-8(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29165]	arabinose ChEBI	+	carbon source
[Ref.: #29165]	fructose ChEBI	+	carbon source
[Ref.: #29165]	glucose ChEBI	+	carbon source
[Ref.: #29165]	glycerol ChEBI	+	carbon source
[Ref.: #29165]	mannitol ChEBI	+	carbon source
[Ref.: #29165]	mannose ChEBI	+	carbon source
[Ref.: #29165]	myo-inositol ChEBI	+	carbon source
[Ref.: #29165]	nitrate ChEBI	+	reduction
[Ref.: #29165]	rhamnose ChEBI	+	carbon source
[Ref.: #29165]	ribitol ChEBI	+	carbon source
[Ref.: #29165]	ribose ChEBI	+	carbon source
[Ref.: #29165]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29165]		catalase	+	1.11.1.6
[Ref.: #29165]		urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16604]	Sample type/isolated from	roots of Acacia auriculiformis A. Cunn. ex. Benth.
[Ref.: #16604]	Geographic location (country and/or sea, region)	Bangkok, Kasetsart University
[Ref.: #16604]	Country	Thailand
[Ref.: #16604]	Country ISO 3 Code	THA
[Ref.: #16604]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Roots of Acacia auriculiformis A. Cunn. ex Benth. from Kasetsart Univ.
[Ref.: #67770]	Host species	Acacia auriculiformis
[Ref.: #67770]	Geographic location (country and/or sea, region)	Bangkok
[Ref.: #67770]	Country	Thailand
[Ref.: #67770]	Country ISO 3 Code	THA
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU921261 (>99% sequence identity) for Pseudonocardia acaciae subclade from Microbeatlas

Aquatic Samples	89
Soil Samples	964
Animal Samples	115
Plant Samples	262
Total Samples	1430

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16604]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16604]	Pseudonocardia acaciae strain GMKU095 16S ribosomal RNA gene, partial sequence	EU921261	1483	ENA	1123023 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudonocardia acaciae DSM 45401 DSM 45401	GCA_000620785	scaffold	GenBank	1123023 tax ID
[Ref.: #66792]	Pseudonocardia acaciae DSM 45401	1123023.3	wgs	PATRIC	1123023 tax ID	*
[Ref.: #66792]	Pseudonocardia acaciae DSM 45401	2558860112	draft	JGI IMG/M	1123023 tax ID	*

[Ref.: #16604]	GC-content	71.6 mol%
[Ref.: #67770]	GC-content	71.6 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudonocardia acaciae DSM 45401 DSM 45401 NCBI: GCA_000620785.1
[Ref.: #69480]	anaerobic	no	99.398	yes
[Ref.: #69480]	gram-positive	yes	100	yes
[Ref.: #69480]	spore-forming	yes	99.688	yes
[Ref.: #69480]	thermophile	no	99.531	yes
[Ref.: #69480]	motile	no	96.109	yes

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudonocardia acaciae DSM 45401 DSM 45401 NCBI: GCA_000620785.1
[Ref.: #69481]	spore-forming	yes	100	no

Availability in culture collections External links

[Ref.: #16604]

Culture collection no.

DSM 45401, BCC 28481, NBRC 104274, NRRL B-24609, GMKU 095, TISTR 1862, JCM 16707, CIP 110060

[Ref.: #20218]

Associated Passport(s) in StrainInfo

842320, 842321, 842322

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudonocardia eucalypti sp. nov., an endophytic actinobacterium with a unique knobby spore surface, isolated from roots of a native Australian eucalyptus tree.	Kaewkla O, Franco CMM	Int J Syst Evol Microbiol	10.1099/ijs.0.022327-0	2010	*
Phylogeny	Pseudonocardia acaciae sp. nov., isolated from roots of Acacia auriculiformis A. Cunn. ex Benth.	Duangmal K, Thamchaipenet A, Matsumoto A, Takahashi Y	Int J Syst Evol Microbiol	10.1099/ijs.0.007724-0	2009	*

References

#16604

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45401

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#29165

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25589 (see below)

#33650 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#25589

IJSEM 1487 2009 ( DOI 10.1099/ijs.0.007724-0 , PubMed 19502340 )

* These data were automatically processed and therefore are not curated

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Pseudonocardia acaciae DSM 45401 DSM 45401

Pseudonocardia acaciae DSM 45401 DSM 45401

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