Name: Halomicroarcula pellucida BNERC31
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133995

Type strain:

Species: Halomicroarcula pellucida

Strain Designation: BNERC31

Culture col. no.: JCM 17820, CECT 7537

Strain history: A. Echigo BNERC31.

NCBI tax ID(s): 1427151 (species)

SI-ID 390919

JCM 17820, CECT 7537

Special Collections

Section

Halomicroarcula pellucida BNERC31 is an aerobe, Gram-negative, motile archaeon that was isolated from food product.

Gram-negative
motile
aerobe
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Halobacteriales*
	Family	*Haloarculaceae*
	Genus	*Halomicroarcula*
	Species	**Halomicroarcula pellucida**
	Full Scientific Name (LPSN)	Halomicroarcula pellucida Echigo et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #31021]	Gram stain	negative

[Ref.: #31021]	Motility	yes

[Ref.: #31021]

Pigment production

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #31021]	growth	25-55 °C
[Ref.: #31021]	optimum	40 °C
[Ref.: #67770]	growth	37 °C

	pH	Kind of pH		pH
[Ref.: #31021]			optimum	7
[Ref.: #31021]			growth	6.0-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31021]

Oxygen tolerance

aerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31021]		NaCl		growth	20-30	%
[Ref.: #31021]		NaCl		optimum	25	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31021]	fructose ChEBI	+	carbon source
[Ref.: #31021]	galactose ChEBI	+	carbon source
[Ref.: #31021]	glycerol ChEBI	+	carbon source
[Ref.: #31021]	maltose ChEBI	+	carbon source
[Ref.: #31021]	nitrate ChEBI	+	reduction
[Ref.: #31021]	sorbitol ChEBI	+	carbon source
[Ref.: #31021]	xylose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity
[Ref.: #31021]		gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31021]	Sample type/isolated from	food product

[Ref.: #67770]	Sample type/isolated from	Solar salt 'Sel marin de Guérande' from France
* marker position based on {}

Isolation sources categories

#Engineered

#Food production

#Food

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB766179 (>99% sequence identity) for Halomicroarcula from Microbeatlas

Aquatic Samples	16
Soil Samples	22
Animal Samples
Plant Samples
Total Samples	38

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31021]	Halomicroarcula pellucida gene for 16S ribosomal RNA, partial sequence, strain: BNERC31, rrnA	AB766179	1471	GenBank ENA	1427151 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halomicroarcula pellucida CECT 7537	GCA_019599515	contig	GenBank ENA	1427151 tax ID	*
[Ref.: #66792]	Halomicroarcula pellucida JCM 17820	GCA_014647235	contig	GenBank ENA	1427151 tax ID	*
[Ref.: #66792]	Halomicroarcula pellucida strain JCM 17820	1427151.3	wgs	PATRIC	1427151 tax ID	*

[Ref.: #31021]	GC-content	64.1 mol%
[Ref.: #67770]	GC-content	64.1 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halomicroarcula pellucida CECT 7537 NCBI: GCA_019599515.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halomicroarcula pellucida strain JCM 17820 PATRIC: 1427151.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	77.305	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	75.847	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	80.081	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	79.659	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	82.14	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	86	no

Availability in culture collections External links

[Ref.: #31021]

Culture collection no.

JCM 17820, CECT 7537

[Ref.: #91661]

SI-ID 390919

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halomicroarcula pellucida gen. nov., sp. nov., a non-pigmented, transparent-colony-forming, halophilic archaeon isolated from solar salt.	Echigo A, Minegishi H, Shimane Y, Kamekura M, Itoh T, Usami R	Int J Syst Evol Microbiol	10.1099/ijs.0.049965-0	2013	*
Phylogeny	Halomicroarcula limicola sp. nov., isolated from a marine solar saltern, and emended description of the genus Halomicroarcula.	Zhang WJ, Cui HL	Int J Syst Evol Microbiol	10.1099/ijs.0.062455-0	2014	*
	Genomic Insights Into New Species of the Genus Halomicroarcula Reveals Potential for New Osmoadaptative Strategies in Halophilic Archaea.	Duran-Viseras A, Sanchez-Porro C, Ventosa A	Front Microbiol	10.3389/fmicb.2021.751746	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31021

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27351 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91661

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID390919.1 )

#27351

IJSEM 3556 2013 ( DOI 10.1099/ijs.0.049965-0 , PubMed 23563231 )

* These data were automatically processed and therefore are not curated

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Halomicroarcula pellucida CECT 7537

Halomicroarcula pellucida strain JCM 17820

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