Name: Litoribacter alkaliphilus JC166
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133992

Type strain:

Species: Litoribacter alkaliphilus

Strain Designation: JC166

Culture col. no.: KCTC 32217, LMG 27256

Strain history: <- Ch Sasikala, JNT Univ., India

NCBI tax ID(s): 1237105 (species)

SI-ID 382173

LMG 27256, KCTC 32217

Section

Litoribacter alkaliphilus JC166 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Cytophagaceae*
	Genus	*Litoribacter*
	Species	**Litoribacter alkaliphilus**
	Full Scientific Name (LPSN)	Litoribacter alkaliphilus Subhash et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #31019]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.988

[Ref.: #31019]	Cell length	1.75 µm

[Ref.: #31019]	Cell width	0.65 µm

[Ref.: #31019]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #31019]	Motility	no
[Ref.: #67771]	Motility	no

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #31019]			optimum	30 °C
[Ref.: #67771]			growth	30 °C

[Ref.: #31019]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31019]			optimum	9.5
[Ref.: #31019]			growth	8.0-12.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31019]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.761

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31019]		NaCl		growth	0-5	%

[Ref.: #67771]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31019]	aspartate ChEBI	+	carbon source
[Ref.: #31019]	cellobiose ChEBI	+	carbon source
[Ref.: #31019]	citrate ChEBI	+	carbon source
[Ref.: #31019]	fructose ChEBI	+	carbon source
[Ref.: #31019]	glucose ChEBI	+	carbon source
[Ref.: #31019]	glutamate ChEBI	+	carbon source
[Ref.: #31019]	lactose ChEBI	+	carbon source
[Ref.: #31019]	mannitol ChEBI	+	carbon source
[Ref.: #31019]	mannose ChEBI	+	carbon source
[Ref.: #31019]	pyruvate ChEBI	+	carbon source
[Ref.: #31019]	sorbitol ChEBI	+	carbon source
[Ref.: #31019]	sucrose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #31019]	catalase	+	1.11.1.6
[Ref.: #31019]	cytochrome oxidase	+	1.9.3.1
[Ref.: #31019]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31019]	Sample type/isolated from	soil

[Ref.: #67771]	Sample type/isolated from	From dry soil, solar saltern
[Ref.: #67771]	Geographic location (country and/or sea, region)	Rameshwaram, Tamilnadu
[Ref.: #67771]	Country	India
[Ref.: #67771]	Country ISO 3 Code	IND
[Ref.: #67771]	Continent	Asia
[Ref.: #67771]	Geographic location	9.1067°/79.5244°
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HE996966 (>99% sequence identity) for Litoribacter from Microbeatlas

Aquatic Samples	79
Soil Samples	85
Animal Samples	103
Plant Samples	13
Total Samples	280

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31019]	Litoribacter alkaliphilus partial 16S rRNA gene, type strain JC166T	HE996966	1390	GenBank	1237105 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Litoribacter alkaliphilus KCTC 32217	GCA_018449405	scaffold	GenBank	1237105 tax ID	*
[Ref.: #66792]	Litoribacter alkaliphilus strain KCTC 32217	1237105.3	wgs	PATRIC	1237105 tax ID	*

[Ref.: #31019]	GC-content	51.9 mol%
[Ref.: #67771]	GC-content	51.9 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Litoribacter alkaliphilus KCTC 32217 NCBI: GCA_018449405.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Litoribacter alkaliphilus KCTC 32217 NCBI: GCA_018449405.1
[Ref.: #69480]	motile	no	89.404	yes
[Ref.: #69480]	flagellated	no	96.969	yes
[Ref.: #69480]	gram-positive	no	98.218	no
[Ref.: #69480]	anaerobic	no	97.763	yes
[Ref.: #69480]	aerobic	yes	91.309	yes
[Ref.: #69480]	halophile	no	59.352	no
[Ref.: #69480]	spore-forming	no	95.552	no
[Ref.: #69480]	thermophile	no	96.662	yes
[Ref.: #69480]	glucose-util	yes	87.649	yes
[Ref.: #69480]	glucose-ferment	no	89.955	no

Availability in culture collections External links

[Ref.: #31019]

Culture collection no.

KCTC 32217, LMG 27256

[Ref.: #91659]

SI-ID 382173

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mongoliicoccus alkaliphilus sp. nov. and Litoribacter alkaliphilus sp. nov., isolated from salt pans.	Subhash Y, Tushar L, Sasikala C, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijs.0.049924-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31019

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27349 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91659

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID382173.1 )

#27349

IJSEM 3457 2013 ( DOI 10.1099/ijs.0.049924-0 , PubMed 23543498 )

* These data were automatically processed and therefore are not curated

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Litoribacter alkaliphilus KCTC 32217

Litoribacter alkaliphilus KCTC 32217

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