Pseudonocardia alni subsp. carboxydivorans (DSM 45349, JCM 14827, KCCM 42678)

Name: Pseudonocardia alni subsp. carboxydivorans (DSM 45349, JCM 14827, KCCM 42678)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13399

Type strain

Strain Designation Y8

Culture col. no. DSM 45349 JCM 14827 KCCM 42678 Y8

NCBI tax ID(s) 415010

Special Collections DSMZ JCM Literature strains

History DSMZ <- JCM/RIKEN <- Y. M. Kim; Y8 JCM <-- Y. M. Kim Y8.

Links

Pseudonocardia alni subsp. carboxydivorans Y8 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil.

spore-forming Gram-positive rod-shaped aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 399858

JCM 14827,DSM 45349

@ref 20215

Last LPSN update 2026-05-29 08:28:02

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Pseudonocardia

Species Pseudonocardia alni subsp. carboxydivorans

Full scientific name Pseudonocardia alni subsp. carboxydivorans (Park et al. 2008) Butdee et al. 2025

Synonyms (1)

Pseudonocardia carboxydivorans

BacDive ID	Other strains from **Pseudonocardia alni subsp. carboxydivorans** (1)	Type strain
13363	P. alni subsp. carboxydivorans DSM 43559, DSM 46013, IMET 7161

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
32606	positive	rod-shaped

Pigmentation

32606

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16343	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
16343	positive	growth	28
32606	positive	growth	03-37
32606	positive	optimum	25
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH
32606	positive	optimum	7
32606	positive	growth	7

Physiology and metabolism

Oxygen tolerance

32606

Oxygen toleranceaerobe

Spore formation

32606

Spore formationyes

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32606	NaCl	positive	growth	0-4 %
32606	NaCl	positive	optimum	0-4 %

Observation

@ref	Observation
32606	aggregates in chains
67770	quinones: MK-9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32606	506227 ChEBI	N-acetylglucosamine	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32606	catalase	+	1.11.1.6
32606	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16343	soil	Seoul	Republic of Korea	KOR	Asia
67770	Soil	Seoul	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence EF114314 (>99% sequence identity) for Pseudonocardia from Microbeatlas

Aquatic Samples	2199
Soil Samples	7999
Animal Samples	3094
Plant Samples	3610
Total Samples	16902

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16343	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16343	Pseudonocardia carboxydivorans strain Y8 16S ribosomal RNA gene, partial sequence	EF114314	1510		415010

GC content

@ref	GC-content (mol%)	Method
16343	77
67770	77	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudonocardia carboxydivorans sp. nov., a carbon monoxide-oxidizing actinomycete, and an emended description of the genus Pseudonocardia.	Park SW, Park ST, Lee JE, Kim YM	Int J Syst Evol Microbiol	10.1099/ijs.0.65765-0	2008

References

#16343	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45349
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28819	IJSEM 2475 2008 ( DOI 10.1099/ijs.0.65765-0 , PubMed 18984679 )
#32606	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28819
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Pseudonocardia alni subsp. carboxydivorans (DSM 45349, JCM 14827, KCCM 42678)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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