Algibacter luteus (CGMCC 1.12213, KACC 16457, P7-3-5)

Name: Algibacter luteus (CGMCC 1.12213, KACC 16457, P7-3-5)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133984

Type strain

Strain Designation P7-3-5

Culture col. no. CGMCC 1.12213 KACC 16457 P7-3-5

NCBI tax ID(s) 1178825

Special Collections Literature strains

Algibacter luteus P7-3-5 is a facultative aerobe, Gram-negative, motile bacterium that was isolated from soil.

Gram-negative motile rod-shaped facultative aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

Culture Collection Numbers

CGMCC 1.12213 KACC 16457 P7-3-5

@ref 20215

Last LPSN update 2026-02-09 11:32:05

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Algibacter

Species Algibacter luteus

Full scientific name Algibacter luteus (Zhang et al. 2013) Li et al. 2022

Synonyms (1)

Arenitalea lutea

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
30998	negative	1.1 µm	0.45 µm	rod-shaped	gliding
125438						94
125438	negative					96.5
125439	negative					98.8

Pigmentation

30998

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
30998	positive	growth	04-40
30998	positive	optimum	30

Culture pH

@ref	Ability	Type	PH	PH range
30998	positive	optimum	7
30998	positive	growth	6.0-8.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30998	facultative aerobe
125439	obligate aerobe	98.1

Spore formation

@ref	Spore formation	Confidence
125438		90.315
125439		95.4

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30998	NaCl	positive	growth	0.5-5 %
30998	NaCl	positive	optimum	1.5 %

Observation

30998

Observationaggregates in clumps

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30998	4853 ChEBI	esculin	+	hydrolysis
30998	17234 ChEBI	glucose	+	carbon source
30998	17306 ChEBI	maltose	+	carbon source
30998	37684 ChEBI	mannose	+	carbon source
30998	17632 ChEBI	nitrate	+	reduction

Enzymes

@ref	Value	Activity	Ec
30998	acid phosphatase	+	3.1.3.2
30998	alkaline phosphatase	+	3.1.3.1
30998	alpha-galactosidase	+	3.2.1.22
30998	catalase	+	1.11.1.6
30998	gelatinase	+

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	adipate degradation	100	2 of 2
66794	threonine metabolism	100	10 of 10
66794	CMP-KDO biosynthesis	100	4 of 4
66794	gluconeogenesis	100	8 of 8
66794	L-lactaldehyde degradation	100	3 of 3
66794	ppGpp biosynthesis	100	4 of 4
66794	kanosamine biosynthesis II	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	palmitate biosynthesis	95.45	21 of 22
66794	Entner Doudoroff pathway	90	9 of 10
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	photosynthesis	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	pentose phosphate pathway	81.82	9 of 11
66794	tryptophan metabolism	81.58	31 of 38
66794	starch degradation	80	8 of 10
66794	glycogen metabolism	80	4 of 5
66794	vitamin K metabolism	80	4 of 5
66794	cellulose degradation	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	heme metabolism	78.57	11 of 14
66794	serine metabolism	77.78	7 of 9
66794	valine metabolism	77.78	7 of 9
66794	d-mannose degradation	77.78	7 of 9
66794	NAD metabolism	77.78	14 of 18
66794	glycolysis	76.47	13 of 17
66794	sulfopterin metabolism	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	citric acid cycle	71.43	10 of 14
66794	propionate fermentation	70	7 of 10
66794	phenylalanine metabolism	69.23	9 of 13
66794	leucine metabolism	69.23	9 of 13
66794	glutamate and glutamine metabolism	67.86	19 of 28
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	flavin biosynthesis	66.67	10 of 15
66794	acetoin degradation	66.67	2 of 3
66794	molybdenum cofactor biosynthesis	66.67	6 of 9
66794	formaldehyde oxidation	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	pyrimidine metabolism	66.67	30 of 45
66794	purine metabolism	65.96	62 of 94
66794	lysine metabolism	64.29	27 of 42
66794	glutathione metabolism	64.29	9 of 14
66794	tyrosine metabolism	64.29	9 of 14
66794	d-xylose degradation	63.64	7 of 11
66794	proline metabolism	63.64	7 of 11
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	histidine metabolism	62.07	18 of 29
66794	methionine metabolism	61.54	16 of 26
66794	cysteine metabolism	61.11	11 of 18
66794	degradation of hexoses	61.11	11 of 18
66794	non-pathway related	60.53	23 of 38
66794	methylglyoxal degradation	60	3 of 5
66794	glycine betaine biosynthesis	60	3 of 5
66794	alanine metabolism	58.62	17 of 29
66794	propanol degradation	57.14	4 of 7
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	degradation of sugar acids	56	14 of 25
66794	nitrate assimilation	55.56	5 of 9
66794	arginine metabolism	54.17	13 of 24
66794	urea cycle	53.85	7 of 13
66794	degradation of pentoses	53.57	15 of 28
66794	ascorbate metabolism	50	11 of 22
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	ketogluconate metabolism	50	4 of 8
66794	butanoate fermentation	50	2 of 4
66794	glycine metabolism	50	5 of 10
66794	lipid metabolism	48.39	15 of 31
66794	isoprenoid biosynthesis	46.15	12 of 26
66794	vitamin B6 metabolism	45.45	5 of 11
66794	metabolism of disaccharids	45.45	5 of 11
66794	oxidative phosphorylation	42.86	39 of 91
66794	mevalonate metabolism	42.86	3 of 7
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	carotenoid biosynthesis	40.91	9 of 22
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	myo-inositol biosynthesis	40	4 of 10
66794	arachidonate biosynthesis	40	2 of 5
66794	bacilysin biosynthesis	40	2 of 5
66794	3-chlorocatechol degradation	40	2 of 5
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	sulfate reduction	38.46	5 of 13
66794	polyamine pathway	34.78	8 of 23
66794	cyanate degradation	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	pantothenate biosynthesis	33.33	2 of 6
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	IAA biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	degradation of sugar alcohols	31.25	5 of 16
66794	vitamin B1 metabolism	30.77	4 of 13
66794	phenol degradation	30	6 of 20
66794	coenzyme M biosynthesis	30	3 of 10
66794	cardiolipin biosynthesis	28.57	2 of 7
66794	arachidonic acid metabolism	27.78	5 of 18
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	3-phenylpropionate degradation	26.67	4 of 15
66794	carnitine metabolism	25	2 of 8
66794	biotin biosynthesis	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	toluene degradation	25	1 of 4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

30998

Sample typesoil

Taxonmaps

69479

Global distribution of 16S sequence JQ807811 (>99% sequence identity) for Arenitalea lutea subclade from Microbeatlas

Aquatic Samples	1146
Soil Samples	44
Animal Samples	42
Plant Samples	4
Total Samples	1236

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2667528186 annotated assembly for Algibacter luteus CGMCC 1.12213	scaffold	GCA_900141715	1178825.6	2667528186	1178825	75.66
66792	P735.v1.0 assembly for Algibacter luteus P7-3-5	contig	GCA_000283015	1178825.3	2565956800	1178825	69.66

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
30998	Algibacter luteus strain P7-3-5 16S ribosomal RNA gene, partial sequence	JQ807811	1483		1178825

GC content

30998

GC-content (mol%)32.1

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Algibacter luteus CGMCC 1.12213
NCBI: GCA_900141715

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	95.40	no
125439	motility	BacteriaNetⓘ	no	74.60	no
125439	gram_stain	BacteriaNetⓘ	negative	98.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Arenitalea lutea CGMCC 1.12213
NCBI: GCA_900141715.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.50	no
125438	anaerobic	anaerobicⓘ	no	97.84	yes
125438	aerobic	aerobicⓘ	yes	74.45	yes
125438	spore-forming	spore-formingⓘ	no	90.32	no
125438	thermophilic	thermophileⓘ	no	99.45	yes
125438	flagellated	motile2+ⓘ	no	94.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Arenitalea lutea gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from intertidal sand.	Zhang XY, Liu A, Liu C, Li H, Li GW, Xu Z, Chen XL, Zhou BC, Zhang YZ	Int J Syst Evol Microbiol	10.1099/ijs.0.049304-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27328	IJSEM 2853 2013 ( DOI 10.1099/ijs.0.049304-0 , PubMed 23315415 )
#30998	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27328
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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Algibacter luteus (CGMCC 1.12213, KACC 16457, P7-3-5)

Name and taxonomic classification

Culture Collection Numbers

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_900141715

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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