Name: Paenalcaligenes hermetiae KACC 16840
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133980

Type strain:

Species: Paenalcaligenes hermetiae

Culture col. no.: KACC 16840, JCM 18423, KBL 009, CIP 110818

Strain history: CIP <- 2014, JCM <- 2012, SJ. Lee, Kyung Hee Univ., Seoul, Korea: strain KBL009

NCBI tax ID(s): 1157987 (species)

SI-ID 413710

CIP 110818

Special Collections

Other strains from Paenalcaligenes hermetiae

Section

Paenalcaligenes hermetiae KACC 16840 is a facultative anaerobe, Gram-negative, rod-shaped bacterium that was isolated from larval gut.

Gram-negative
rod-shaped
facultative anaerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Alcaligenaceae*
	Genus	*Paenalcaligenes*
	Species	**Paenalcaligenes hermetiae**
	Full Scientific Name (LPSN)	Paenalcaligenes hermetiae Lee et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30990]	Gram stain	negative
[Ref.: #119886]	Gram stain	positive

[Ref.: #30990]	Cell shape	rod-shaped
[Ref.: #119886]	Cell shape	rod-shaped

[Ref.: #30990]	Motility	no
[Ref.: #119886]	Motility	no

[Ref.: #30990]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #119886]

Culture medium

CIP Medium 72

[Ref.: #119886]

Culture medium growth

[Ref.: #119886]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #30990]	growth	15-42 °C
[Ref.: #30990]	optimum	37 °C
[Ref.: #67770]	growth	37 °C

	pH	Kind of pH		pH
[Ref.: #30990]			optimum	6
[Ref.: #30990]			growth	5.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30990]

Oxygen tolerance

facultative anaerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30990]		NaCl		growth	0-15	%
[Ref.: #30990]		NaCl		optimum	1.5	%

[Ref.: #30990]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30990]	2-oxopentanoate ChEBI	+	carbon source
[Ref.: #30990]	acetate ChEBI	+	carbon source
[Ref.: #30990]	alanine ChEBI	+	carbon source
[Ref.: #30990]	asparagine ChEBI	+	carbon source
[Ref.: #30990]	aspartate ChEBI	+	carbon source
[Ref.: #30990]	citrate ChEBI	+	carbon source
[Ref.: #30990]	formate ChEBI	+	carbon source
[Ref.: #30990]	glutamate ChEBI	+	carbon source
[Ref.: #30990]	glycogen ChEBI	+	carbon source
[Ref.: #30990]	histidine ChEBI	+	carbon source
[Ref.: #30990]	L-alaninamide ChEBI	+	carbon source
[Ref.: #30990]	lactate ChEBI	+	carbon source
[Ref.: #30990]	leucine ChEBI	+	carbon source
[Ref.: #30990]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #30990]	ornithine ChEBI	+	carbon source
[Ref.: #30990]	phenylalanine ChEBI	+	carbon source
[Ref.: #30990]	phenylethylamine ChEBI	+	carbon source
[Ref.: #30990]	propionate ChEBI	+	carbon source
[Ref.: #30990]	serine ChEBI	+	carbon source
[Ref.: #30990]	succinate ChEBI	+	carbon source
[Ref.: #30990]	threonine ChEBI	+	carbon source
[Ref.: #30990]	tween 40 ChEBI	+	carbon source
[Ref.: #30990]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30990]		catalase	+	1.11.1.6
[Ref.: #30990]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30990]	Sample type/isolated from	larval gut

[Ref.: #67770]	Sample type/isolated from	Larval gut of Hermetia illucens (black soldier fly) fed with Korean food waste in South Korea
[Ref.: #67770]	Host species	Hermetia illucens

[Ref.: #119886]	Sample type/isolated from	Animal, Larval gut of Hermetia illucens (black soldier fly) fed with Korean food waste in South Korea
[Ref.: #119886]	Country	Republic of Korea
[Ref.: #119886]	Country ISO 3 Code	KOR
[Ref.: #119886]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host Body-Site

#Gastrointestinal tract

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JN873915 (>99% sequence identity) for Paenalcaligenes hermetiae subclade from Microbeatlas

Aquatic Samples	166
Soil Samples	59
Animal Samples	473
Plant Samples	28
Total Samples	726

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #119886]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30990]	Paenalcaligenes hermetiae strain KBL009 16S ribosomal RNA gene, partial sequence	JN873915	1410	GenBank ENA	1157987 tax ID

[Ref.: #30990]

GC-content

56.1 mol%

Availability in culture collections External links

[Ref.: #30990]

Culture collection no.

KACC 16840, JCM 18423, KBL 009, CIP 110818

[Ref.: #91653]

SI-ID 413710

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenalcaligenes suwonensis sp. nov., isolated from spent mushroom compost.	Moon JY, Lim JM, Ahn JH, Weon HY, Kwon SW, Kim SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.058412-0	2013	*
Phylogeny	Paenalcaligenes hermetiae sp. nov., isolated from the larval gut of Hermetia illucens (Diptera: Stratiomyidae), and emended description of the genus Paenalcaligenes.	Lee YY, Lee JK, Park KH, Kim SY, Roh SW, Lee SB, Choi Y, Lee SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.049098-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30990

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27320 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91653

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID413710.1 )

#119886 Collection of Institut Pasteur ; Curators of the CIP; CIP 110818

#27320

IJSEM 4224 2013 ( DOI 10.1099/ijs.0.049098-0 , PubMed 23811136 )

* These data were automatically processed and therefore are not curated

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