Name: Pseudonocardia ailaonensis DSM 44979
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 13398

Type strain:

Species: Pseudonocardia ailaonensis

Culture col. no.: DSM 44979, JCM 16009, KCTC 19315, YIM 45505

Strain history: <- S Qin, Yunnan Inst Microbiol, China [6316]

NCBI tax ID(s): 367279 (species)

SI-ID 294136

DSM 44979, KCTC 19315, JCM 16009

Special Collections

Section

Pseudonocardia ailaonensis DSM 44979 is an aerobe, spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from forest soil.

Gram-positive
rod-shaped
spore-forming
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Pseudonocardia*
	Species	**Pseudonocardia ailaonensis**
	Full Scientific Name (LPSN)	Pseudonocardia ailaonensis Qin et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32578]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #32578]	Cell shape	rod-shaped

[Ref.: #32578]	Motility	no

[Ref.: #20147]	Colony color	Broom yellow (1032)
[Ref.: #20147]	Incubation period	10-14 days
[Ref.: #20147]	Cultivation medium used	ISP 2

[Ref.: #20147]	Colony color	Beige (1001)
[Ref.: #20147]	Incubation period	10-14 days
[Ref.: #20147]	Cultivation medium used	ISP 3

[Ref.: #20147]	Colony color	Beige (1001)
[Ref.: #20147]	Incubation period	10-14 days
[Ref.: #20147]	Cultivation medium used	ISP 4

[Ref.: #20147]	Colony color	Beige (1001)
[Ref.: #20147]	Incubation period	10-14 days
[Ref.: #20147]	Cultivation medium used	ISP 5

[Ref.: #20147]	Colony color	Beige (1001)
[Ref.: #20147]	Incubation period	10-14 days
[Ref.: #20147]	Cultivation medium used	ISP 6

[Ref.: #20147]	Colony color	Broom yellow (1032)
[Ref.: #20147]	Incubation period	10-14 days
[Ref.: #20147]	Cultivation medium used	ISP 7

[Ref.: #32578]

Pigment production

[Ref.: #20147]	Multicellular complex forming ability	yes
[Ref.: #20147]	Multicellular complex name	Aerial Mycelium
[Ref.: #20147]	Multicellular complex color	Cream
[Ref.: #20147]	Medium Name (multicellularity)	ISP 2

[Ref.: #20147]	Multicellular complex forming ability	yes
[Ref.: #20147]	Multicellular complex name	Aerial Mycelium
[Ref.: #20147]	Multicellular complex color	Cream
[Ref.: #20147]	Medium Name (multicellularity)	ISP 3

[Ref.: #20147]	Multicellular complex forming ability	no
[Ref.: #20147]	Medium Name (multicellularity)	ISP 4

[Ref.: #20147]	Multicellular complex forming ability	no
[Ref.: #20147]	Medium Name (multicellularity)	ISP 5

[Ref.: #20147]	Multicellular complex forming ability	yes
[Ref.: #20147]	Multicellular complex name	Aerial Mycelium
[Ref.: #20147]	Multicellular complex color	Cream
[Ref.: #20147]	Medium Name (multicellularity)	ISP 6

[Ref.: #20147]	Multicellular complex forming ability	no
[Ref.: #20147]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12138]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #12138]

Culture medium composition

expand / minimize

[Ref.: #20147]

Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 6

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 7

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Culture medium growth

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #12138]	growth	28 °C
[Ref.: #20147]	optimum	28 °C
[Ref.: #32578]	growth	15-37 °C
[Ref.: #32578]	optimum	28 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #32578]			optimum	07-08
[Ref.: #32578]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32578]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #32578]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32578]		NaCl		growth	0-5	%
[Ref.: #32578]		NaCl		optimum	0-5	%

[Ref.: #32578]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-8(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32578]	arabinose ChEBI	+	carbon source
[Ref.: #32578]	galactose ChEBI	+	carbon source
[Ref.: #32578]	glucose ChEBI	+	carbon source
[Ref.: #32578]	nitrate ChEBI	+	reduction
[Ref.: #32578]	ribose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #32578]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #32578]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #20147]	928	not determinedn.d.	+	+	-	-	+	+	-	-	-	+	-	+	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12138]	Sample type/isolated from	forest soil
[Ref.: #12138]	Geographic location (country and/or sea, region)	Yunnan Province
[Ref.: #12138]	Country	China
[Ref.: #12138]	Country ISO 3 Code	CHN
[Ref.: #12138]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Yunnan Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ344632 (>99% sequence identity) for Pseudonocardia ailaonensis from Microbeatlas

Aquatic Samples	13
Soil Samples	39
Animal Samples	8
Plant Samples	12
Total Samples	72

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20147]

Biosafety level

German classification

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12138]	Pseudonocardia ailaonensis strain YIM 45505 16S ribosomal RNA gene, partial sequence	DQ344632	1467	GenBank ENA	367279 tax ID

[Ref.: #12138]	GC-content	74.1 mol%	high performance liquid chromatography (HPLC)
[Ref.: #32578]	GC-content	74.1 mol%

Availability in culture collections External links

[Ref.: #12138]

Culture collection no.

DSM 44979, JCM 16009, KCTC 19315, YIM 45505

[Ref.: #82595]

SI-ID 294136

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudonocardia pini sp. nov., an endophytic actinobacterium isolated from roots of the pine tree Callitris preissii.	Kaewkla O, Franco CMM	Arch Microbiol	10.1007/s00203-021-02309-3	2021	*
Phylogeny	Pseudonocardia xishanensis sp. nov., an endophytic actinomycete isolated from the roots of Artemisia annua L.	Zhao GZ, Li J, Zhu WY, Wei DQ, Zhang JL, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.037028-0	2011	*
Phylogeny	Pseudonocardia ailaonensis sp. nov., isolated from soil in China.	Qin S, Su YY, Zhang YQ, Wang HB, Jiang CL, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.65721-0	2008	*

References

#12138

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44979

#20147

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32578

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28793 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#82595

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID294136.1 )

#28793

IJSEM 2086 2008 ( DOI 10.1099/ijs.0.65721-0 , PubMed 18768609 )

* These data were automatically processed and therefore are not curated

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