Name: Caballeronia humi CCUG 63059
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133975

Type strain:

Species: Caballeronia humi

Culture col. no.: CCUG 63059, LMG 22934

NCBI tax ID(s): 326474 (species)

Section

Caballeronia humi CCUG 63059 is an anaerobe, Gram-negative, rod-shaped bacterium that was isolated from soil.

Gram-negative
rod-shaped
anaerobe
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Caballeronia*
	Species	**Caballeronia humi**
	Full Scientific Name (LPSN)	Caballeronia humi (Vandamme et al. 2013) Dobritsa and Samadpour 2016

	Synonym	Burkholderia humi
	Synonym	Paraburkholderia humi

Information on morphological and physiological properties Morphology

[Ref.: #30983]	Gram stain	negative
[Ref.: #30983]	Cell length	1.75 µm
[Ref.: #30983]	Cell width	0.7 µm
[Ref.: #30983]	Cell shape	rod-shaped
[Ref.: #30983]	Motility	no

[Ref.: #30983]

Pigment production

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #30983]			growth	15-30 °C
[Ref.: #62937]			growth	30 °C

[Ref.: #62937]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #30983]			growth	06-07

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30983]	Oxygen tolerance	anaerobe
[Ref.: #62937]	Oxygen tolerance	aerobe

[Ref.: #30983]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30983]		NaCl		growth	01-02	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30983]	acetate ChEBI	+	carbon source
[Ref.: #30983]	alanine ChEBI	+	carbon source
[Ref.: #30983]	arginine ChEBI	+	carbon source
[Ref.: #30983]	aspartate ChEBI	+	carbon source
[Ref.: #30983]	citrate ChEBI	+	carbon source
[Ref.: #30983]	formate ChEBI	+	carbon source
[Ref.: #30983]	fructose ChEBI	+	carbon source
[Ref.: #30983]	fucose ChEBI	+	carbon source
[Ref.: #30983]	galactonate ChEBI	+	carbon source
[Ref.: #30983]	galactose ChEBI	+	carbon source
[Ref.: #30983]	galacturonate ChEBI	+	carbon source
[Ref.: #30983]	gluconate ChEBI	+	carbon source
[Ref.: #30983]	glucose ChEBI	+	carbon source
[Ref.: #30983]	glucuronamide ChEBI	+	carbon source
[Ref.: #30983]	glutamate ChEBI	+	carbon source
[Ref.: #30983]	histidine ChEBI	+	carbon source
[Ref.: #30983]	L-arabitol ChEBI	+	carbon source
[Ref.: #30983]	lactate ChEBI	+	carbon source
[Ref.: #30983]	malate ChEBI	+	carbon source
[Ref.: #30983]	mannitol ChEBI	+	carbon source
[Ref.: #30983]	mannose ChEBI	+	carbon source
[Ref.: #30983]	myo-inositol ChEBI	+	carbon source
[Ref.: #30983]	quinate ChEBI	+	carbon source
[Ref.: #30983]	rhamnose ChEBI	+	carbon source
[Ref.: #30983]	sorbitol ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30983]		alkaline phosphatase	+	3.1.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30983]	Sample type/isolated from	soil

[Ref.: #62937]	Sample type/isolated from	Soil
[Ref.: #62937]	Sampling date	2003
[Ref.: #62937]	Country	Netherlands
[Ref.: #62937]	Country ISO 3 Code	NLD
[Ref.: #62937]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Caballeronia humi LMG 22934	GCA_001544475	contig	GenBank	326474 tax ID	*
[Ref.: #66792]	Burkholderia humi Vandamme strain LMG 22934	326474.3	wgs	PATRIC	326474 tax ID	*
[Ref.: #66792]	Caballeronia humi LMG 22934	2724679456	draft	JGI IMG/M	326474 tax ID	*

[Ref.: #30983]

GC-content

63 mol%

Availability in culture collections External links

[Ref.: #30983]

Culture collection no.

CCUG 63059, LMG 22934

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Caballeronia ginsengisoli sp. nov., isolated from ginseng cultivating soil.	Quan XT, Liu QZ, Siddiqi MZ, Im WT	Arch Microbiol	10.1007/s00203-018-1577-0	2018	*
Phylogeny	Burkholderia megalochromosomata sp. nov., isolated from grassland soil.	Baek I, Seo B, Lee I, Lee K, Park SC, Yi H, Chun J	Int J Syst Evol Microbiol	10.1099/ijs.0.000046	2015	*
Phylogeny	Burkholderia humi sp. nov., Burkholderia choica sp. nov., Burkholderia telluris sp. nov., Burkholderia terrestris sp. nov. and Burkholderia udeis sp. nov.: Burkholderia glathei-like bacteria from soil and rhizosphere soil.	Vandamme P, De Brandt E, Houf K, Salles JF, Dirk van Elsas J, Spilker T, LiPuma JJ	Int J Syst Evol Microbiol	10.1099/ijs.0.048900-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30983

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27313 (see below)

#62937 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 63059

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#27313

IJSEM 4707 2013 ( DOI 10.1099/ijs.0.048900-0 , PubMed 23959831 )

* These data were automatically processed and therefore are not curated

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