Name: Pseudonocardia endophytica DSM 44969
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13397

Type strain:

Species: Pseudonocardia endophytica

Culture col. no.: DSM 44969, CCTCC AA 206026, KCTC 19150, YIM 56035, JCM 16220, BCRC 16906

Strain history: <- S-K Tang, Yunnan Inst. Microbiol, China

NCBI tax ID(s): 401976 (species)

SI-ID 294145

DSM 44969, KCTC 19150, JCM 16220

Section

Pseudonocardia endophytica DSM 44969 is an aerobe, spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from pharmaceutical plant Lobelia clavata.

Gram-positive
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Pseudonocardia*
	Species	**Pseudonocardia endophytica**
	Full Scientific Name (LPSN)	Pseudonocardia endophytica Chen et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #31973]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %92.274

[Ref.: #19713]	Colony color	Gold yellow
[Ref.: #19713]	Incubation period	10-14 days
[Ref.: #19713]	Cultivation medium used	ISP 2

[Ref.: #19713]	Colony color	Oyster white
[Ref.: #19713]	Incubation period	10-14 days
[Ref.: #19713]	Cultivation medium used	ISP 3

[Ref.: #19713]	Colony color	Oyster white
[Ref.: #19713]	Incubation period	10-14 days
[Ref.: #19713]	Cultivation medium used	ISP 4

[Ref.: #19713]	Colony color	Gold yellow
[Ref.: #19713]	Incubation period	10-14 days
[Ref.: #19713]	Cultivation medium used	ISP 5

[Ref.: #19713]	Colony color	Gold yellow
[Ref.: #19713]	Incubation period	10-14 days
[Ref.: #19713]	Cultivation medium used	ISP 6

[Ref.: #19713]	Colony color	Oyster white
[Ref.: #19713]	Incubation period	10-14 days
[Ref.: #19713]	Cultivation medium used	ISP 7

[Ref.: #31973]

Pigment production

[Ref.: #19713]	Multicellular complex forming ability	yes
[Ref.: #19713]	Multicellular complex name	Aerial Mycelium
[Ref.: #19713]	Multicellular complex color	Cream
[Ref.: #19713]	Medium Name (multicellularity)	ISP 2

[Ref.: #19713]	Multicellular complex forming ability	yes
[Ref.: #19713]	Multicellular complex name	Aerial Mycelium
[Ref.: #19713]	Multicellular complex color	Cream
[Ref.: #19713]	Medium Name (multicellularity)	ISP 3

[Ref.: #19713]	Multicellular complex forming ability	yes
[Ref.: #19713]	Multicellular complex name	Aerial Mycelium
[Ref.: #19713]	Multicellular complex color	Cream
[Ref.: #19713]	Medium Name (multicellularity)	ISP 4

[Ref.: #19713]	Multicellular complex forming ability	yes
[Ref.: #19713]	Multicellular complex name	Aerial Mycelium
[Ref.: #19713]	Multicellular complex color	Cream
[Ref.: #19713]	Medium Name (multicellularity)	ISP 5

[Ref.: #19713]	Multicellular complex forming ability	yes
[Ref.: #19713]	Multicellular complex name	Aerial Mycelium
[Ref.: #19713]	Multicellular complex color	Cream
[Ref.: #19713]	Medium Name (multicellularity)	ISP 6

[Ref.: #19713]	Multicellular complex forming ability	yes
[Ref.: #19713]	Multicellular complex name	Aerial Mycelium
[Ref.: #19713]	Multicellular complex color	Cream
[Ref.: #19713]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12128]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #12128]

Culture medium growth

[Ref.: #12128]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12128]

Culture medium composition

expand / minimize

[Ref.: #19713]

Culture medium

ISP 2

[Ref.: #19713]

Culture medium growth

[Ref.: #19713]

Culture medium composition

expand / minimize

[Ref.: #19713]

Culture medium

ISP 3

[Ref.: #19713]

Culture medium growth

[Ref.: #19713]

Culture medium composition

expand / minimize

[Ref.: #19713]

Culture medium

ISP 4

[Ref.: #19713]

Culture medium growth

[Ref.: #19713]

Culture medium composition

expand / minimize

[Ref.: #19713]

Culture medium

ISP 5

[Ref.: #19713]

Culture medium growth

[Ref.: #19713]

Culture medium composition

expand / minimize

[Ref.: #19713]

Culture medium

ISP 6

[Ref.: #19713]

Culture medium growth

[Ref.: #19713]

Culture medium composition

expand / minimize

[Ref.: #19713]

Culture medium

ISP 7

[Ref.: #19713]

Culture medium growth

[Ref.: #19713]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #12128]	growth	28 °C
[Ref.: #19713]	optimum	28 °C
[Ref.: #31973]	growth	15-37 °C
[Ref.: #31973]	optimum	26 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #12128]	Temperature range	mesophilic
[Ref.: #19713]	Temperature range	mesophilic
[Ref.: #31973]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31973]			optimum	7
[Ref.: #31973]			growth	6.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31973]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #31973]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31973]		NaCl		growth	0-5	%
[Ref.: #31973]		NaCl		optimum	2.5	%

[Ref.: #67770]

Observation

quinones: MK-8(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31973]	asparagine ChEBI	+	carbon source
[Ref.: #31973]	fructose ChEBI	+	carbon source
[Ref.: #31973]	galactose ChEBI	+	carbon source
[Ref.: #31973]	glucose ChEBI	+	carbon source
[Ref.: #31973]	glutamate ChEBI	+	carbon source
[Ref.: #31973]	glycerol ChEBI	+	carbon source
[Ref.: #31973]	maltose ChEBI	+	carbon source
[Ref.: #31973]	propionate ChEBI	+	carbon source
[Ref.: #31973]	ribose ChEBI	+	carbon source
[Ref.: #31973]	salicin ChEBI	+	carbon source
[Ref.: #31973]	sorbitol ChEBI	+	carbon source
[Ref.: #31973]	sucrose ChEBI	+	carbon source
[Ref.: #31973]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #31973]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19713]	538	not determinedn.d.	+	+	+	-	+	+	-	-	-	+	-	-	+	-	+	+	-	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	CMP-KDO biosynthesis	100	4 of 4
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	3-chlorocatechol degradation	100	5 of 5
[Ref.: #66794]	photosynthesis	100	14 of 14
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	IAA biosynthesis	100	3 of 3
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	resorcinol degradation	100	2 of 2
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	100	12 of 12
[Ref.: #66794]	enterobactin biosynthesis	100	3 of 3
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	Entner Doudoroff pathway	100	10 of 10
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	aerobactin biosynthesis	100	1 of 1
[Ref.: #66794]	taurine degradation	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	cyanate degradation	100	3 of 3
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	reductive acetyl coenzyme A pathway	100	7 of 7
[Ref.: #66794]	glycolate and glyoxylate degradation	100	6 of 6
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	aminopropanol phosphate biosynthesis	100	2 of 2
[Ref.: #66794]	aclacinomycin biosynthesis	100	7 of 7
[Ref.: #66794]	ethylmalonyl-CoA pathway	100	5 of 5
[Ref.: #66794]	propanol degradation	100	7 of 7
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	glycine betaine biosynthesis	100	5 of 5
[Ref.: #66794]	CO2 fixation in Crenarchaeota	100	9 of 9
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	flavin biosynthesis	93.33	14 of 15
[Ref.: #66794]	citric acid cycle	92.86	13 of 14
[Ref.: #66794]	heme metabolism	92.86	13 of 14
[Ref.: #66794]	leucine metabolism	92.31	12 of 13
[Ref.: #66794]	phenylalanine metabolism	92.31	12 of 13
[Ref.: #66794]	vitamin B12 metabolism	91.18	31 of 34
[Ref.: #66794]	pentose phosphate pathway	90.91	10 of 11
[Ref.: #66794]	phenol degradation	90	18 of 20
[Ref.: #66794]	propionate fermentation	90	9 of 10
[Ref.: #66794]	glutamate and glutamine metabolism	89.29	25 of 28
[Ref.: #66794]	4-hydroxymandelate degradation	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	NAD metabolism	88.89	16 of 18
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	gluconeogenesis	87.5	7 of 8
[Ref.: #66794]	dTDPLrhamnose biosynthesis	87.5	7 of 8
[Ref.: #66794]	purine metabolism	87.23	82 of 94
[Ref.: #66794]	tryptophan metabolism	86.84	33 of 38
[Ref.: #66794]	peptidoglycan biosynthesis	86.67	13 of 15
[Ref.: #66794]	3-phenylpropionate degradation	86.67	13 of 15
[Ref.: #66794]	glutathione metabolism	85.71	12 of 14
[Ref.: #66794]	histidine metabolism	82.76	24 of 29
[Ref.: #66794]	glycolysis	82.35	14 of 17
[Ref.: #66794]	proline metabolism	81.82	9 of 11
[Ref.: #66794]	methionine metabolism	80.77	21 of 26
[Ref.: #66794]	factor 420 biosynthesis	80	4 of 5
[Ref.: #66794]	gallate degradation	80	4 of 5
[Ref.: #66794]	hydrogen production	80	4 of 5
[Ref.: #66794]	tyrosine metabolism	78.57	11 of 14
[Ref.: #66794]	allantoin degradation	77.78	7 of 9
[Ref.: #66794]	cysteine metabolism	77.78	14 of 18
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	pyrimidine metabolism	77.78	35 of 45
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	urea cycle	76.92	10 of 13
[Ref.: #66794]	alanine metabolism	75.86	22 of 29
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	ketogluconate metabolism	75	6 of 8
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	cyclohexanol degradation	75	3 of 4
[Ref.: #66794]	lipid metabolism	74.19	23 of 31
[Ref.: #66794]	metabolism of disaccharids	72.73	8 of 11
[Ref.: #66794]	tetrahydrofolate metabolism	71.43	10 of 14
[Ref.: #66794]	ubiquinone biosynthesis	71.43	5 of 7
[Ref.: #66794]	non-pathway related	71.05	27 of 38
[Ref.: #66794]	arginine metabolism	70.83	17 of 24
[Ref.: #66794]	coenzyme M biosynthesis	70	7 of 10
[Ref.: #66794]	isoprenoid biosynthesis	69.23	18 of 26
[Ref.: #66794]	degradation of sugar alcohols	68.75	11 of 16
[Ref.: #66794]	androgen and estrogen metabolism	68.75	11 of 16
[Ref.: #66794]	oxidative phosphorylation	68.13	62 of 91
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	lysine metabolism	66.67	28 of 42
[Ref.: #66794]	selenocysteine biosynthesis	66.67	4 of 6
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	sphingosine metabolism	66.67	4 of 6
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	methane metabolism	66.67	2 of 3
[Ref.: #66794]	ascorbate metabolism	63.64	14 of 22
[Ref.: #66794]	carotenoid biosynthesis	63.64	14 of 22
[Ref.: #66794]	sulfate reduction	61.54	8 of 13
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	cellulose degradation	60	3 of 5
[Ref.: #66794]	creatinine degradation	60	3 of 5
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	58.82	10 of 17
[Ref.: #66794]	degradation of sugar acids	56	14 of 25
[Ref.: #66794]	nitrate assimilation	55.56	5 of 9
[Ref.: #66794]	phenylpropanoid biosynthesis	53.85	7 of 13
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	4-hydroxyphenylacetate degradation	50	5 of 10
[Ref.: #66794]	carnitine metabolism	50	4 of 8
[Ref.: #66794]	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	vitamin E metabolism	50	2 of 4
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	lactate fermentation	50	2 of 4
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	degradation of pentoses	50	14 of 28
[Ref.: #66794]	grixazone biosynthesis	50	1 of 2
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	46.15	6 of 13
[Ref.: #66794]	lipid A biosynthesis	44.44	4 of 9
[Ref.: #66794]	benzoyl-CoA degradation	42.86	3 of 7
[Ref.: #66794]	methanogenesis from CO2	41.67	5 of 12
[Ref.: #66794]	metabolism of amino sugars and derivatives	40	2 of 5
[Ref.: #66794]	D-cycloserine biosynthesis	40	2 of 5
[Ref.: #66794]	elloramycin biosynthesis	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	arachidonic acid metabolism	38.89	7 of 18
[Ref.: #66794]	degradation of hexoses	38.89	7 of 18
[Ref.: #66794]	d-xylose degradation	36.36	4 of 11
[Ref.: #66794]	cholesterol biosynthesis	36.36	4 of 11
[Ref.: #66794]	vitamin B6 metabolism	36.36	4 of 11
[Ref.: #66794]	polyamine pathway	34.78	8 of 23
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	myo-inositol biosynthesis	30	3 of 10
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	daunorubicin biosynthesis	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12128]	Sample type/isolated from	pharmaceutical plant Lobelia clavata
[Ref.: #12128]	Host species	Lobelia clavata
[Ref.: #12128]	Geographic location (country and/or sea, region)	Yunnan Province, Xishuangbanna
[Ref.: #12128]	Country	China
[Ref.: #12128]	Country ISO 3 Code	CHN
[Ref.: #12128]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From plant
[Ref.: #67771]	Geographic location (country and/or sea, region)	Yunnan Province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Healthy inner tissue of the traditional Chinese medicinal plant Lobelia clavata
[Ref.: #67770]	Host species	Lobelia clavata
[Ref.: #67770]	Geographic location (country and/or sea, region)	Xishuangbanna, Yunnan Province, south-west China
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Plant (Factory)
#Infection	#Medical product	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12128]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12128]	Pseudonocardia endophytica strain YIM 56035 16S ribosomal RNA gene, partial sequence	DQ887489	1452	ENA	401976 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudonocardia endophytica DSM 44969	GCA_004339565	contig	GenBank	401976 tax ID
[Ref.: #66792]	Pseudonocardia endophytica strain DSM 44969	401976.4	wgs	PATRIC	401976 tax ID	*
[Ref.: #66792]	Pseudonocardia endophytica DSM 44969	2806310577	draft	JGI IMG/M	401976 tax ID	*

[Ref.: #12128]	GC-content	70.3 mol%
[Ref.: #67770]	GC-content	70.3 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudonocardia endophytica strain DSM 44969 PATRIC: 401976.4
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudonocardia endophytica strain DSM 44969 PATRIC: 401976.4
[Ref.: #69480]	gram-positive	yes	84.456	no
[Ref.: #69480]	anaerobic	no	99.043	no
[Ref.: #69480]	halophile	no	92.877	no
[Ref.: #69480]	spore-forming	yes	86.754	yes
[Ref.: #69480]	glucose-util	yes	88.203	yes
[Ref.: #69480]	aerobic	yes	94.223	yes
[Ref.: #69480]	thermophile	no	99.09	yes
[Ref.: #69480]	motile	no	95.239	no
[Ref.: #69480]	flagellated	no	98.393	no
[Ref.: #69480]	glucose-ferment	no	93.897	no

Availability in culture collections External links

[Ref.: #12128]

Culture collection no.

DSM 44969, CCTCC AA 206026, KCTC 19150, YIM 56035, JCM 16220, BCRC 16906

[Ref.: #82594]

SI-ID 294145

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudonocardia cytotoxica sp. nov., a novel actinomycete isolated from an Arctic fjord with potential to produce cytotoxic compound.	Dhaneesha M, Umar M, Merlin TS, Krishnan KP, Sukumaran V, Sinha RK, Anas A, Fu P, MacMillan JB, Sajeevan TP	Antonie Van Leeuwenhoek	10.1007/s10482-020-01490-7	2020	*
Phylogeny	Pseudonocardia soli sp. nov., isolated from mountain soil.	Thawai C	Int J Syst Evol Microbiol	10.1099/ijsem.0.002672	2018	*
Phylogeny	Pseudonocardia nantongensis sp. nov., a novel endophytic actinomycete isolated from the coastal halophyte Tamarix chinensis Lour.	Xing K, Qin S, Bian GK, Zhang YJ, Zhang WD, Dai CC, Liu CH, Li WJ, Jiang JH	Antonie Van Leeuwenhoek	10.1007/s10482-012-9764-5	2012	*
Phylogeny	Pseudonocardia endophytica sp. nov., isolated from the pharmaceutical plant Lobelia clavata.	Chen HH, Qin S, Li J, Zhang YQ, Xu LH, Jiang CL, Kim CJ, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64740-0	2009	*

References

#12128

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44969

#19713

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31973

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28228 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#82594

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID294145.1 )

#28228

IJSEM 559 2009 ( DOI 10.1099/ijs.0.64740-0 , PubMed 19244441 )

* These data were automatically processed and therefore are not curated

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Pseudonocardia endophytica strain DSM 44969

Pseudonocardia endophytica strain DSM 44969

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