Name: Gramella aestuarii BS12
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133966

Type strain:

Species: Gramella aestuarii

Strain Designation: BS12

Culture col. no.: KACC 16188, JCM 17790

Strain history: C. O. Jeon BS12.

NCBI tax ID(s): 1028746 (species)

Section

Gramella aestuarii BS12 is an aerobe, Gram-negative, motile bacterium that was isolated from tidal flat.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Gramella*
	Species	**Gramella aestuarii**
	Full Scientific Name (PNU)	Gramella aestuarii Jeong et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30970]	Gram stain	negative
[Ref.: #30970]	Cell length	2.5 µm
[Ref.: #30970]	Cell width	0.6 µm
[Ref.: #30970]	Cell shape	rod-shaped
[Ref.: #30970]	Motility	yes
[Ref.: #30970]	Flagellum arrangement	gliding

[Ref.: #30970]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30970]	growth	05-40 °C
[Ref.: #30970]	optimum	25 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #30970]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30970]			optimum	7.25
[Ref.: #30970]			growth	5.5-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30970]

Oxygen tolerance

aerobe

[Ref.: #30970]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30970]		NaCl		growth	1.0-11.0	%
[Ref.: #30970]		NaCl		optimum	3	%

[Ref.: #30970]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30970]	2-oxopentanoate ChEBI	+	carbon source
[Ref.: #30970]	acetate ChEBI	+	carbon source
[Ref.: #30970]	alanine ChEBI	+	carbon source
[Ref.: #30970]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #30970]	aspartate ChEBI	+	carbon source
[Ref.: #30970]	cellobiose ChEBI	+	carbon source
[Ref.: #30970]	citrate ChEBI	+	carbon source
[Ref.: #30970]	dextrin ChEBI	+	carbon source
[Ref.: #30970]	fructose ChEBI	+	carbon source
[Ref.: #30970]	galactonate ChEBI	+	carbon source
[Ref.: #30970]	galacturonate ChEBI	+	carbon source
[Ref.: #30970]	gluconate ChEBI	+	carbon source
[Ref.: #30970]	glucose ChEBI	+	carbon source
[Ref.: #30970]	glucuronamide ChEBI	+	carbon source
[Ref.: #30970]	glutamate ChEBI	+	carbon source
[Ref.: #30970]	glycine ChEBI	+	carbon source
[Ref.: #30970]	glycogen ChEBI	+	carbon source
[Ref.: #30970]	L-alaninamide ChEBI	+	carbon source
[Ref.: #30970]	lactate ChEBI	+	carbon source
[Ref.: #30970]	lactose ChEBI	+	carbon source
[Ref.: #30970]	leucine ChEBI	+	carbon source
[Ref.: #30970]	malonate ChEBI	+	carbon source
[Ref.: #30970]	maltose ChEBI	+	carbon source
[Ref.: #30970]	mannose ChEBI	+	carbon source
[Ref.: #30970]	melibiose ChEBI	+	carbon source
[Ref.: #30970]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #30970]	proline ChEBI	+	carbon source
[Ref.: #30970]	propionate ChEBI	+	carbon source
[Ref.: #30970]	raffinose ChEBI	+	carbon source
[Ref.: #30970]	rhamnose ChEBI	+	carbon source
[Ref.: #30970]	serine ChEBI	+	carbon source
[Ref.: #30970]	succinate ChEBI	+	carbon source
[Ref.: #30970]	sucrose ChEBI	+	carbon source
[Ref.: #30970]	trehalose ChEBI	+	carbon source
[Ref.: #30970]	uridine ChEBI	+	carbon source
[Ref.: #30970]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #30970]	acid phosphatase	+	3.1.3.2
[Ref.: #30970]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30970]	catalase	+	1.11.1.6
[Ref.: #30970]	cytochrome oxidase	+	1.9.3.1
[Ref.: #30970]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30970]	Sample type/isolated from	tidal flat

[Ref.: #67770]	Sample type/isolated from	Surface tidal flat sediment of the Boseong-gun in South Korea
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Tidal flat

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30970]	Gramella aestuarii strain BS12 16S ribosomal RNA gene, partial sequence	JF751047	1492	GenBank	1028746 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Gramella aestuarii BS12	GCA_009735585	contig	GenBank	1028746 tax ID	*
[Ref.: #66792]	Gramella aestuarii BS12	2891820663	draft	JGI IMG/M	1028746 tax ID	*

[Ref.: #30970]

GC-content

42.3 mol%

Availability in culture collections External links

[Ref.: #30970]

Culture collection no.

KACC 16188, JCM 17790

[Ref.: #20218]

Associated Passport(s) in StrainInfo

890442, 890443

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Gramella bathymodioli sp. nov., isolated from a mussel inhabiting a hydrothermal field in the Okinawa Trough.	Liu L, Wang S, Zhou S, Sun W, Fu T, Zhang Y, Zhang XH, Yu M	Int J Syst Evol Microbiol	10.1099/ijsem.0.004488	2020	*
Phylogeny	Gramella aestuarii sp. nov., isolated from a tidal flat, and emended description of Gramella echinicola.	Jeong SH, Jin HM, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.048694-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#30970

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27300 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#27300

IJSEM 2872 2013 ( DOI 10.1099/ijs.0.048694-0 , PubMed 23315405 )

* These data were automatically processed and therefore are not curated

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