Name: Chryseobacterium kwangjuense KJ1R5
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133961

Type strain:

Species: Chryseobacterium kwangjuense

Strain Designation: KJ1R5

Culture col. no.: KACC 13029, JCM 15904

Strain history: K. D. Kim KJ1R5.

NCBI tax ID(s): 267125 (species)

Section

Chryseobacterium kwangjuense KJ1R5 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from plant associated.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Chryseobacterium*
	Species	**Chryseobacterium kwangjuense**
	Full Scientific Name (LPSN)	Chryseobacterium kwangjuense Sang et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30958]	Gram stain	negative

[Ref.: #30958]	Cell length	1.75 µm

[Ref.: #30958]	Cell width	0.9 µm

[Ref.: #30958]	Cell shape	rod-shaped

[Ref.: #30958]	Motility	no

[Ref.: #30958]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30958]	growth	10-38 °C
[Ref.: #30958]	optimum	33 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #30958]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30958]			optimum	7.5
[Ref.: #30958]			growth	6.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30958]

Oxygen tolerance

aerobe

[Ref.: #30958]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30958]		NaCl		growth	01-03	%

[Ref.: #67770]

Observation

quinones: MK-6

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30958]		esculin ChEBI	+	hydrolysis

	Enzymes	Enzyme	Enzyme activity
[Ref.: #30958]		gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30958]	Sample type/isolated from	plant associated

[Ref.: #67770]	Sample type/isolated from	Root of pepper (Capsicum annuum L.) in Kwangju
[Ref.: #67770]	Host species	Capsicum annuum L.
[Ref.: #67770]	Geographic location (country and/or sea, region)	Jeonnam Province
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Plants

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY514021 (>99% sequence identity) for Chryseobacterium kwangjuense subclade from Microbeatlas

Aquatic Samples	1339
Soil Samples	346
Animal Samples	1138
Plant Samples	91
Total Samples	2914

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30958]	Chryseobacterium kwangjuense strain KJ1R5 16S ribosomal RNA gene, partial sequence	AY514021	1432	GenBank	267125 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chryseobacterium kwangjuense KJ1R5	GCA_001563495	contig	GenBank	267125 tax ID	*
[Ref.: #66792]	Chryseobacterium kwangjuense KJ1R5	2728369107	draft	JGI IMG/M	267125 tax ID	*

[Ref.: #30958]	GC-content	40.2 mol%
[Ref.: #67770]	GC-content	40.2 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #30958]

Culture collection no.

KACC 13029, JCM 15904

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Draft genome and description of Chryseobacterium phocaeense sp. nov.: a new bacterial species isolated from the sputum of a cystic fibrosis patient.	Abou Abdallah R, Okdah L, Bou Khalil J, Anani H, Fournier PE, Raoult D, Bittar F	Arch Microbiol	10.1007/s00203-019-01704-1	2019	*
Genetics	Draft Genome Sequence of a Biocontrol Rhizobacterium, Chryseobacterium kwangjuense Strain KJ1R5, Isolated from Pepper (Capsicum annuum).	Jeong JJ, Park H, Park BH, Mannaa M, Sang MK, Choi IG, Kim KD	Genome Announc	10.1128/genomeA.00301-16	2016	*
Phylogeny	Chryseobacterium kwangjuense sp. nov., isolated from pepper (Capsicum annuum L.) root.	Sang MK, Kim HS, Myung IS, Ryu CM, Kim BS, Kim KD	Int J Syst Evol Microbiol	10.1099/ijs.0.048496-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30958

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27288 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#27288

IJSEM 2835 2013 ( DOI 10.1099/ijs.0.048496-0 , PubMed 23315413 )

* These data were automatically processed and therefore are not curated

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