Chryseobacterium kwangjuense (KACC 13029, JCM 15904, KJ1R5)

Name: Chryseobacterium kwangjuense (KACC 13029, JCM 15904, KJ1R5)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133961

Type strain

Strain Designation KJ1R5

Culture col. no. KACC 13029 JCM 15904 KJ1R5

NCBI tax ID(s) 267125

Special Collections JCM Literature strains

Links

Chryseobacterium kwangjuense KJ1R5 is an aerobe, Gram-negative, rod-shaped prokaryote that was isolated from plant associated.

Gram-negative rod-shaped aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 132156

JCM 15904

@ref 20215

Last LPSN update 2025-12-16 10:01:56

Domain Pseudomonadati

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Weeksellaceae

Genus Chryseobacterium

Species Chryseobacterium kwangjuense

Full scientific name Chryseobacterium kwangjuense Sang et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
30958	negative	1.75 µm	0.9 µm	rod-shaped
125439	negative					99.9

Pigmentation

30958

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
30958	positive	growth	10-38
30958	positive	optimum	33	mesophilic
67770	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH
30958	positive	optimum	7.5
30958	positive	growth	6.0-8.0

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30958	aerobe
125439	obligate aerobe	94.2

Spore formation

@ref	Spore formation	Confidence
30958
125439		97.1

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30958	NaCl	positive	growth	01-03 %

Observation

67770

Observationquinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30958	4853 ChEBI	esculin	+	hydrolysis

Enzymes

@ref	Value	Activity
30958	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Plants

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
30958	plant associated
67770	Root of pepper (Capsicum annuum L.) in Kwangju	Capsicum annuum L.	Jeonnam Province	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence AY514021 (>99% sequence identity) for Chryseobacterium kwangjuense subclade from Microbeatlas

Aquatic Samples	1339
Soil Samples	346
Animal Samples	1138
Plant Samples	91
Total Samples	2914

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM156349v1 assembly for Chryseobacterium kwangjuense KJ1R5	contig	GCA_001563495	267125.3	2728369107	267125	74.77

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
30958	Chryseobacterium kwangjuense strain KJ1R5 16S ribosomal RNA gene, partial sequence	AY514021	1432		267125

GC content

@ref	GC-content (mol%)	Method
30958	40.2
67770	40.2	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Chryseobacterium kwangjuense KJ1R5
NCBI: GCA_001563495

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.10	no
125439	motility	BacteriaNetⓘ	no	77.10	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.20	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of a Biocontrol Rhizobacterium, Chryseobacterium kwangjuense Strain KJ1R5, Isolated from Pepper (Capsicum annuum).	Jeong JJ, Park H, Park BH, Mannaa M, Sang MK, Choi IG, Kim KD	Genome Announc	10.1128/genomeA.00301-16	2016
Phylogeny	Draft genome and description of Chryseobacterium phocaeense sp. nov.: a new bacterial species isolated from the sputum of a cystic fibrosis patient.	Abou Abdallah R, Okdah L, Bou Khalil J, Anani H, Fournier PE, Raoult D, Bittar F	Arch Microbiol	10.1007/s00203-019-01704-1	2019
Phylogeny	Chryseobacterium kwangjuense sp. nov., isolated from pepper (Capsicum annuum L.) root.	Sang MK, Kim HS, Myung IS, Ryu CM, Kim BS, Kim KD	Int J Syst Evol Microbiol	10.1099/ijs.0.048496-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27288	IJSEM 2835 2013 ( DOI 10.1099/ijs.0.048496-0 , PubMed 23315413 )
#30958	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27288
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Chryseobacterium kwangjuense (KACC 13029, JCM 15904, KJ1R5)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_001563495

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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