Name: Noviherbaspirillum malthae CC-AFH3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133958

Type strain:

Species: Noviherbaspirillum malthae

Strain Designation: CC-AFH3

Culture col. no.: BCRC 80516, JCM 18414

Strain history: C.-C. Young CC-AFH3.

NCBI tax ID(s): 1260987 (species)

Section

Noviherbaspirillum malthae CC-AFH3 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from oil-contaminated site.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Oxalobacteraceae*
	Genus	*Noviherbaspirillum*
	Species	**Noviherbaspirillum malthae**
	Full Scientific Name (LPSN)	Noviherbaspirillum malthae Lin et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30949]	Gram stain	negative

[Ref.: #30949]	Cell length	1.5 µm

[Ref.: #30949]	Cell width	1.1 µm

[Ref.: #30949]	Cell shape	rod-shaped

[Ref.: #30949]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30949]	growth	20-40 °C
[Ref.: #30949]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #30949]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30949]			optimum	6
[Ref.: #30949]			growth	5.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30949]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30949]		NaCl		growth	0-2	%

[Ref.: #30949]

Observation

aggregates in clumps

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30949]		proline ChEBI	+	carbon source
[Ref.: #30949]		tween 80 ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #30949]	acid phosphatase	+	3.1.3.2
[Ref.: #30949]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30949]	catalase	+	1.11.1.6
[Ref.: #30949]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30949]	Sample type/isolated from	oil-contaminated site

[Ref.: #67770]	Sample type/isolated from	Oil-contaminated site at Kaohsiung City
[Ref.: #67770]	Country	Taiwan
[Ref.: #67770]	Country ISO 3 Code	TWN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered

#Contamination

#Oil (Fuel)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ490985 (>99% sequence identity) for Noviherbaspirillum malthae subclade from Microbeatlas

Aquatic Samples	374
Soil Samples	1253
Animal Samples	627
Plant Samples	257
Total Samples	2511

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30949]	Noviherbaspirillum malthae strain CC-AFH3 16S ribosomal RNA gene, partial sequence	DQ490985	1453	GenBank	1260987 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Noviherbaspirillum malthae CC-AFH3	GCA_015352985	contig	GenBank	1260987 tax ID	*

[Ref.: #30949]

GC-content

63.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Noviherbaspirillum malthae CC-AFH3 NCBI: GCA_015352985.1
[Ref.: #69480]	motile	yes	85.506	no
[Ref.: #69480]	flagellated	yes	66.385	no
[Ref.: #69480]	gram-positive	no	98.515	yes
[Ref.: #69480]	anaerobic	no	98.471	yes
[Ref.: #69480]	aerobic	yes	93.422	yes
[Ref.: #69480]	halophile	no	95.88	no
[Ref.: #69480]	spore-forming	no	92.976	no
[Ref.: #69480]	thermophile	no	99.141	yes
[Ref.: #69480]	glucose-util	yes	52.742	no
[Ref.: #69480]	glucose-ferment	no	92.686	no

Availability in culture collections External links

[Ref.: #30949]

Culture collection no.

BCRC 80516, JCM 18414

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Noviherbaspirillum aerium sp. nov., isolated from air.	Xue H, Piao CG, Lin YH, Bian DR, Li Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.004537	2020	*
Phylogeny	Noviherbaspirillum denitrificans sp. nov., a denitrifying bacterium isolated from rice paddy soil and Noviherbaspirillum autotrophicum sp. nov., a denitrifying, facultatively autotrophic bacterium isolated from rice paddy soil and proposal to reclassify Herbaspirillum massiliense as Noviherbaspirillum massiliense comb. nov.	Ishii S, Ashida N, Ohno H, Segawa T, Yabe S, Otsuka S, Yokota A, Senoo K	Int J Syst Evol Microbiol	10.1099/ijsem.0.001875	2017	*
Phylogeny	Noviherbaspirillum suwonense sp. nov., isolated from an air sample.	Kim SJ, Moon JY, Weon HY, Hong SB, Seok SJ, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.057372-0	2014	*
Phylogeny	Description of Noviherbaspirillum malthae gen. nov., sp. nov., isolated from an oil-contaminated soil, and proposal to reclassify Herbaspirillum soli, Herbaspirillum aurantiacum, Herbaspirillum canariense and Herbaspirillum psychrotolerans as Noviherbaspirillum soli comb. nov., Noviherbaspirillum aurantiacum comb. nov., Noviherbaspirillum canariense comb. nov. and Noviherbaspirillum psychrotolerans comb. nov. based on polyphasic analysis.	Lin SY, Hameed A, Arun AB, Liu YC, Hsu YH, Lai WA, Rekha PD, Young CC	Int J Syst Evol Microbiol	10.1099/ijs.0.048231-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30949

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27279 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#27279

IJSEM 4100 2013 ( DOI 10.1099/ijs.0.048231-0 , PubMed 23749276 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Noviherbaspirillum malthae in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF